Variant report

Variant	rs10961437
Chromosome Location	chr9:14231361-14231362
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10961433	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10961436	0.81[CEU][hapmap]
rs10961442	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892593	chr9:13948798-14233159	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1023303	chr9:14025605-14286269	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv540069	chr9:14025605-14286269	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv892597	chr9:14163383-14233159	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv916811	chr9:14210978-14542068	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14221000-14232000	Weak transcription	Fetal Brain Male	brain
2	chr9:14221200-14245600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:14221800-14237400	Weak transcription	Aorta	Aorta
4	chr9:14221800-14237400	Weak transcription	Gastric	stomach
5	chr9:14222000-14232000	Weak transcription	Brain Germinal Matrix	brain
6	chr9:14222200-14235200	Weak transcription	Fetal Intestine Small	intestine
7	chr9:14222400-14232000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr9:14222400-14235200	Weak transcription	Liver	Liver
9	chr9:14222400-14235400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:14222400-14236400	Weak transcription	HSMM	muscle
11	chr9:14222400-14236800	Weak transcription	NHLF	lung
12	chr9:14222400-14237200	Weak transcription	Stomach Mucosa	stomach
13	chr9:14222400-14237800	Weak transcription	NH-A	brain
14	chr9:14222400-14238000	Weak transcription	Placenta	Placenta
15	chr9:14222400-14240600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr9:14222600-14231400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr9:14222600-14231800	Weak transcription	Colon Smooth Muscle	Colon
18	chr9:14222600-14235200	Weak transcription	Duodenum Mucosa	Duodenum
19	chr9:14222600-14235800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:14222600-14236400	Weak transcription	Psoas Muscle	Psoas
21	chr9:14222600-14236400	Weak transcription	HMEC	breast
22	chr9:14222600-14236800	Weak transcription	NHEK	skin
23	chr9:14222600-14237000	Weak transcription	Hela-S3	cervix
24	chr9:14222600-14238000	Weak transcription	Osteobl	bone
25	chr9:14222800-14236800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr9:14223000-14236400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr9:14223200-14236600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr9:14224000-14238000	Weak transcription	Pancreas	Pancrea
29	chr9:14224400-14246800	Weak transcription	Fetal Muscle Trunk	muscle
30	chr9:14224800-14232000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr9:14224800-14235200	Weak transcription	Small Intestine	intestine
32	chr9:14224800-14237800	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr9:14227000-14232000	Weak transcription	Fetal Stomach	stomach
34	chr9:14227200-14235200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr9:14227600-14236400	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr9:14228600-14232000	Weak transcription	Fetal Kidney	kidney
37	chr9:14229200-14233200	Enhancers	Fetal Heart	heart
38	chr9:14230000-14237000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr9:14230200-14232000	Enhancers	A549	lung
40	chr9:14230400-14231600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr9:14230400-14232200	Enhancers	Brain Cingulate Gyrus	brain
42	chr9:14230400-14232600	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr9:14230400-14233000	Enhancers	Brain Anterior Caudate	brain
44	chr9:14230600-14231400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr9:14230600-14231400	Strong transcription	HUVEC	blood vessel
46	chr9:14230600-14232400	Enhancers	ES-I3 Cell Line	embryonic stem cell
47	chr9:14230600-14232400	Enhancers	HUES48 Cell Line	embryonic stem cell
48	chr9:14230600-14232400	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr9:14230600-14232800	Enhancers	iPS-20b Cell Line	embryonic stem cell
50	chr9:14230800-14231400	Enhancers	Left Ventricle	heart

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