Variant report

Variant	rs10961496
Chromosome Location	chr9:14382955-14382956
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs569050	0.81[ASN][1000 genomes]
rs630973	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv916811	chr9:14210978-14542068	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv831516	chr9:14280695-14437445	Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv892600	chr9:14370172-14469146	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv892601	chr9:14380528-14405555	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14366200-14391600	Weak transcription	Aorta	Aorta
2	chr9:14373800-14383800	Weak transcription	Psoas Muscle	Psoas
3	chr9:14379800-14383800	Weak transcription	Left Ventricle	heart
4	chr9:14380600-14383000	Weak transcription	Fetal Lung	lung
5	chr9:14380800-14383200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr9:14380800-14383200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr9:14381000-14383200	Weak transcription	HUVEC	blood vessel
8	chr9:14381000-14384000	Weak transcription	K562	blood
9	chr9:14382400-14384000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr9:14382400-14384800	Enhancers	Fetal Heart	heart
11	chr9:14382600-14383400	Weak transcription	Fetal Muscle Leg	muscle
12	chr9:14382600-14383600	Enhancers	Fetal Brain Female	brain
13	chr9:14382600-14384000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr9:14382800-14384000	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr9:14382800-14384200	Enhancers	Primary hematopoietic stem cells	blood
16	chr9:14382800-14384200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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