Variant report

Variant	rs10961577
Chromosome Location	chr9:14562314-14562315
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10961566	1.00[EUR][1000 genomes]
rs10961567	1.00[EUR][1000 genomes]
rs10961574	0.92[EUR][1000 genomes]
rs10961579	1.00[EUR][1000 genomes]
rs10961589	1.00[EUR][1000 genomes]
rs12378036	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72702974	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv831517	chr9:14512924-14738206	Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv613637	chr9:14524438-15011915	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv3362157	chr9:14542189-14791977	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Visceral adipose tissue adjusted for BMI	22589738	GWAS catalog

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14561200-14563000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr9:14561400-14562400	Enhancers	H1 Cell Line	embryonic stem cell
3	chr9:14561400-14562400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:14561400-14562400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr9:14561400-14562400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:14561400-14563000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:14561600-14562400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr9:14561600-14562400	Flanking Active TSS	HepG2	liver
9	chr9:14561600-14562600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr9:14561600-14562800	Enhancers	Fetal Kidney	kidney
11	chr9:14561600-14563200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr9:14561800-14562400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr9:14561800-14562600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr9:14561800-14562600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr9:14561800-14562600	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr9:14561800-14565600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:14562000-14562400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr9:14562000-14562400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:14562000-14562600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr9:14562000-14562600	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr9:14562000-14563000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr9:14562000-14565200	Weak transcription	K562	blood
23	chr9:14562200-14563000	Enhancers	Fetal Muscle Trunk	muscle
24	chr9:14562200-14564200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr9:14562200-14564400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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