Variant report

Variant	rs10962299
Chromosome Location	chr9:16151800-16151801
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10962302	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10962304	0.82[ASN][1000 genomes]
rs16934169	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2067789	0.99[ASN][1000 genomes]
rs2067790	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4961664	0.85[ASN][1000 genomes]
rs7026280	0.84[ASN][1000 genomes]
rs9407716	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv892638	chr9:16106659-16172580	Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16145600-16152600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:16145800-16152000	Weak transcription	HSMMtube	muscle
3	chr9:16147000-16152000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr9:16148200-16154600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:16150000-16153000	Enhancers	Colon Smooth Muscle	Colon
6	chr9:16150400-16152800	Enhancers	NHEK	skin
7	chr9:16150600-16152200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr9:16150600-16153400	Enhancers	Rectal Smooth Muscle	rectum
9	chr9:16150800-16152000	Enhancers	Placenta Amnion	Placenta Amnion
10	chr9:16150800-16154400	Weak transcription	Adipose Nuclei	Adipose
11	chr9:16151000-16151800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr9:16151000-16152400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr9:16151000-16154000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr9:16151000-16154400	Weak transcription	Ovary	ovary
15	chr9:16151000-16155200	Enhancers	Fetal Thymus	thymus
16	chr9:16151000-16155400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr9:16151200-16151800	Enhancers	Dnd41	blood
18	chr9:16151200-16152000	Enhancers	Primary T cells from cord blood	blood
19	chr9:16151200-16154000	Enhancers	Fetal Muscle Trunk	muscle
20	chr9:16151400-16152400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:16151400-16152400	Weak transcription	Fetal Stomach	stomach
22	chr9:16151400-16154600	Weak transcription	Pancreas	Pancrea
23	chr9:16151400-16154600	Enhancers	Stomach Smooth Muscle	stomach
24	chr9:16151800-16154600	Enhancers	Fetal Muscle Leg	muscle
25	chr9:16151800-16154600	Weak transcription	Dnd41	blood

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