Variant report

Variant	rs10962375
Chromosome Location	chr9:16311845-16311846
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10217707	0.93[EUR][1000 genomes]
rs10962376	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10962378	0.90[EUR][1000 genomes]
rs12351741	0.90[EUR][1000 genomes]
rs12351743	0.90[EUR][1000 genomes]
rs12683271	0.91[EUR][1000 genomes]
rs12686344	0.92[EUR][1000 genomes]
rs16934412	0.83[AMR][1000 genomes]
rs72714923	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv892644	chr9:16275107-16389006	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv892645	chr9:16292669-16368732	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv613668	chr9:16310620-16377360	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16308600-16313400	Enhancers	Ovary	ovary
2	chr9:16308800-16318200	Enhancers	Fetal Lung	lung
3	chr9:16309000-16312400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:16310600-16314400	Weak transcription	NHLF	lung
5	chr9:16310600-16317000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:16310600-16317400	Weak transcription	Colon Smooth Muscle	Colon
7	chr9:16311000-16315200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:16311200-16312200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr9:16311200-16312200	Weak transcription	Lung	lung
10	chr9:16311200-16312400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:16311200-16312600	Enhancers	Fetal Stomach	stomach
12	chr9:16311200-16315200	Weak transcription	Adipose Nuclei	Adipose
13	chr9:16311200-16315200	Weak transcription	Right Ventricle	heart
14	chr9:16311400-16312000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr9:16311400-16312200	Enhancers	Stomach Mucosa	stomach
16	chr9:16311400-16315800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr9:16311600-16312000	Bivalent/Poised TSS	Fetal Brain Male	brain
18	chr9:16311600-16314600	Weak transcription	Fetal Muscle Leg	muscle
19	chr9:16311800-16312600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr9:16311800-16314600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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