Variant report

Variant	rs10962476
Chromosome Location	chr9:16531045-16531046
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10121584	0.97[YRI][hapmap];0.81[AFR][1000 genomes]
rs10123558	0.87[JPT][hapmap]
rs10810576	0.81[CHB][hapmap]
rs10962474	0.94[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs10962475	0.88[ASN][1000 genomes]
rs10962477	0.80[JPT][hapmap]
rs10962496	0.87[JPT][hapmap]
rs10962522	0.82[CHB][hapmap]
rs16934786	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs1927618	0.82[CHB][hapmap]
rs7031602	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1028923	chr9:16519711-16547863	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16515600-16532600	Weak transcription	Aorta	Aorta
2	chr9:16520200-16535400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:16522800-16531800	Weak transcription	Fetal Kidney	kidney
4	chr9:16522800-16540800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr9:16523000-16535400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:16523200-16532200	Weak transcription	NHDF-Ad	bronchial
7	chr9:16525000-16551400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr9:16525400-16531200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr9:16525800-16531400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr9:16525800-16532800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr9:16527000-16532400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr9:16527000-16533200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr9:16527400-16532400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr9:16527400-16532400	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr9:16527400-16532400	Weak transcription	NH-A	brain
16	chr9:16527600-16531400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr9:16527800-16532200	Weak transcription	HUVEC	blood vessel
18	chr9:16528000-16535600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr9:16528000-16553200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr9:16528800-16551200	Weak transcription	Fetal Intestine Large	intestine
21	chr9:16530000-16531800	Enhancers	Colon Smooth Muscle	Colon
22	chr9:16530200-16531400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr9:16530200-16531400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr9:16530200-16531600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr9:16530200-16533400	Enhancers	NHEK	skin
26	chr9:16530400-16531400	Enhancers	Muscle Satellite Cultured Cells	--
27	chr9:16530400-16531400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr9:16530400-16531400	Enhancers	Fetal Stomach	stomach
29	chr9:16530400-16533000	Enhancers	HMEC	breast
30	chr9:16530600-16531400	Enhancers	Fetal Lung	lung
31	chr9:16530600-16531400	Enhancers	HSMMtube	muscle
32	chr9:16530600-16533200	Enhancers	A549	lung
33	chr9:16530600-16533600	Enhancers	Osteobl	bone
34	chr9:16530800-16531200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr9:16530800-16531200	Enhancers	Adipose Nuclei	Adipose
36	chr9:16530800-16531200	Weak transcription	HSMM	muscle
37	chr9:16530800-16531400	Enhancers	Ovary	ovary
38	chr9:16530800-16531400	Enhancers	Psoas Muscle	Psoas
39	chr9:16530800-16531600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr9:16530800-16533800	Enhancers	NHLF	lung
41	chr9:16531000-16531400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr9:16531000-16531400	Active TSS	Stomach Smooth Muscle	stomach
43	chr9:16531000-16532400	Weak transcription	Rectal Smooth Muscle	rectum

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