Variant report

Variant	rs10962495
Chromosome Location	chr9:16577080-16577081
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10810577	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10962494	0.83[ASN][1000 genomes]
rs10962496	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10962509	1.00[AFR][1000 genomes]
rs10962515	1.00[AFR][1000 genomes]
rs4961724	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv528443	chr9:16570142-16581967	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16569800-16582400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:16571400-16582000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr9:16572000-16581800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr9:16572800-16581400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:16572800-16581800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:16572800-16582600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:16573200-16586400	Weak transcription	Pancreas	Pancrea
8	chr9:16573200-16591800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr9:16574600-16580000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr9:16575200-16578800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr9:16575400-16582400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:16575800-16582400	Weak transcription	HSMMtube	muscle
13	chr9:16575800-16585800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr9:16576000-16582000	Weak transcription	NHLF	lung
15	chr9:16576000-16586400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr9:16576000-16601600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr9:16576200-16577800	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr9:16576200-16580000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr9:16576200-16581600	Weak transcription	Fetal Muscle Leg	muscle
20	chr9:16576200-16583200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr9:16576400-16577600	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr9:16576400-16578000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr9:16576400-16579000	Enhancers	Colon Smooth Muscle	Colon
24	chr9:16576400-16579400	Weak transcription	Ovary	ovary
25	chr9:16576400-16579600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr9:16576400-16580000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr9:16576400-16581600	Weak transcription	Stomach Smooth Muscle	stomach
28	chr9:16576400-16582200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr9:16576400-16582600	Weak transcription	Fetal Lung	lung
30	chr9:16576400-16590800	Weak transcription	HSMM	muscle
31	chr9:16576400-16601400	Weak transcription	NHDF-Ad	bronchial
32	chr9:16576600-16577600	Weak transcription	Rectal Smooth Muscle	rectum
33	chr9:16576600-16578000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr9:16576600-16580800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr9:16576600-16581800	Weak transcription	Fetal Stomach	stomach
36	chr9:16576600-16582000	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr9:16576600-16584200	Weak transcription	HUVEC	blood vessel
38	chr9:16576800-16580000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr9:16576800-16581800	Weak transcription	Osteobl	bone

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