Variant report

Variant	rs10962504
Chromosome Location	chr9:16598985-16598986
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10756760	0.94[CHB][hapmap]
rs10810575	0.88[CHB][hapmap]
rs10810576	0.81[CHB][hapmap]
rs10810577	0.94[CHB][hapmap]
rs10962477	0.94[CHB][hapmap]
rs10962491	0.83[CHB][hapmap]
rs10962494	0.88[CHB][hapmap]
rs10962496	0.88[CHB][hapmap]
rs10962522	0.90[JPT][hapmap]
rs1927618	0.82[CHB][hapmap]
rs4961723	0.94[CHB][hapmap]
rs7848696	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv524264	chr9:16596071-16611692	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16576000-16601600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:16576400-16601400	Weak transcription	NHDF-Ad	bronchial
3	chr9:16583000-16606800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:16583200-16611200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:16586800-16604400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:16594800-16601800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr9:16594800-16601800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr9:16595000-16611200	Weak transcription	NHLF	lung
9	chr9:16597600-16601400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr9:16597600-16604400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr9:16597600-16610800	Weak transcription	Fetal Stomach	stomach
12	chr9:16598000-16599000	Enhancers	A549	lung
13	chr9:16598000-16599400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr9:16598200-16599400	Enhancers	Fetal Lung	lung
15	chr9:16598400-16599000	Enhancers	Colon Smooth Muscle	Colon
16	chr9:16598400-16599000	Enhancers	Ovary	ovary
17	chr9:16598400-16599000	Enhancers	Osteobl	bone
18	chr9:16598400-16599600	Enhancers	NHEK	skin
19	chr9:16598600-16599000	Enhancers	HSMM	muscle
20	chr9:16598600-16599400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr9:16598600-16599800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr9:16598800-16601600	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr9:16598800-16608200	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr9:16598800-16611400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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