Variant report

Variant	rs10962548
Chromosome Location	chr9:16714414-16714415
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10481558	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10756788	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10756789	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10756790	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10756796	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10756798	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10756801	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10810598	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10810601	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10810604	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10962554	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10962559	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13284478	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13296274	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1330303	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1952689	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62541515	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1032856	chr9:16465330-16773471	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv540073	chr9:16465330-16773471	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	esv2758627	chr9:16641966-16809203	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv2759673	chr9:16641966-16809203	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv892649	chr9:16677221-16761597	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv892650	chr9:16696187-16950860	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16708000-16718000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr9:16708200-16716200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:16709000-16726000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr9:16709200-16718000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr9:16709400-16718600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr9:16709400-16719000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr9:16709600-16714600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr9:16709600-16714600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:16709600-16714800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr9:16709600-16725800	Weak transcription	Fetal Stomach	stomach
11	chr9:16710400-16719000	Weak transcription	NH-A	brain
12	chr9:16711200-16718000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr9:16711400-16715000	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr9:16711400-16718000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr9:16711400-16718000	Weak transcription	Fetal Lung	lung
16	chr9:16711400-16726600	Weak transcription	Psoas Muscle	Psoas
17	chr9:16711800-16720800	Weak transcription	HSMM	muscle
18	chr9:16712600-16716200	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr9:16713000-16717000	Weak transcription	Fetal Kidney	kidney
20	chr9:16713200-16715600	Weak transcription	A549	lung
21	chr9:16713200-16718600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr9:16713200-16725800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr9:16713200-16726600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr9:16713400-16718000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr9:16713600-16715800	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr9:16713800-16717000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr9:16714000-16717000	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr9:16714200-16714600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr9:16714200-16715800	Enhancers	Colon Smooth Muscle	Colon
30	chr9:16714200-16716600	Enhancers	NHLF	lung
31	chr9:16714200-16718000	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr9:16714200-16718800	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr9:16714200-16721000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr9:16714200-16722000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr9:16714200-16722000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr9:16714400-16714800	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr9:16714400-16714800	Weak transcription	Ovary	ovary
38	chr9:16714400-16716600	Enhancers	Osteobl	bone
39	chr9:16714400-16717000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr9:16714400-16722200	Enhancers	NHDF-Ad	bronchial

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