Variant report

Variant	rs10962623
Chromosome Location	chr9:16822855-16822856
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10810638	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10962626	0.88[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10962628	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10962629	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10962630	0.86[CEU][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11788101	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11789463	0.81[CEU][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs34790477	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs36067353	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3936215	1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3936216	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7024447	0.83[CEU][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7863196	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv892650	chr9:16696187-16950860	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv892651	chr9:16816755-16869240	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16796400-16824400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr9:16810600-16824400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:16810600-16824400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr9:16810800-16824200	Weak transcription	HSMM	muscle
5	chr9:16812200-16824400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr9:16812600-16823800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:16812600-16826200	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr9:16812800-16824600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:16814200-16824000	Weak transcription	NHLF	lung
10	chr9:16814400-16824200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr9:16817000-16823400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:16817200-16824400	Weak transcription	Fetal Stomach	stomach
13	chr9:16817200-16824400	Weak transcription	HSMMtube	muscle
14	chr9:16817400-16824400	Weak transcription	Ovary	ovary
15	chr9:16817400-16824600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:16817800-16824200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr9:16817800-16824400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr9:16817800-16824400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr9:16817800-16824400	Weak transcription	Osteobl	bone
20	chr9:16818000-16824200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr9:16821600-16824000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr9:16822600-16823800	Weak transcription	Fetal Lung	lung
23	chr9:16822600-16824400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr9:16822800-16823800	Weak transcription	Colon Smooth Muscle	Colon
25	chr9:16822800-16824200	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr9:16822800-16824400	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr9:16822800-16824400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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