Variant report

Variant	rs10962820
Chromosome Location	chr9:17018213-17018214
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10962819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10962821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10962823	0.96[EUR][1000 genomes]
rs62560467	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2764141	chr9:16903446-17351711	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv613692	chr9:16963863-17070633	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv892656	chr9:17008137-17076367	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv892657	chr9:17008137-17223492	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17014800-17018400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr9:17015000-17018400	Weak transcription	NHEK	skin
3	chr9:17016600-17020400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr9:17016800-17019000	Enhancers	NHDF-Ad	bronchial
5	chr9:17017800-17018400	Flanking Active TSS	NH-A	brain
6	chr9:17017800-17018600	Enhancers	Brain Germinal Matrix	brain
7	chr9:17017800-17018600	Weak transcription	Psoas Muscle	Psoas
8	chr9:17017800-17018600	Flanking Active TSS	Osteobl	bone
9	chr9:17017800-17018800	Enhancers	HSMMtube	muscle
10	chr9:17017800-17019400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:17018000-17018400	Enhancers	Fetal Thymus	thymus
12	chr9:17018000-17018400	Flanking Active TSS	HSMM	muscle
13	chr9:17018000-17018600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr9:17018000-17018600	Enhancers	Esophagus	oesophagus
15	chr9:17018000-17018600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
16	chr9:17018000-17018800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr9:17018000-17019400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr9:17018000-17019800	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr9:17018200-17018400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
20	chr9:17018200-17018400	Flanking Active TSS	NHLF	lung
21	chr9:17018200-17018600	Enhancers	Fetal Muscle Leg	muscle
22	chr9:17018200-17018600	Enhancers	Ovary	ovary
23	chr9:17018200-17019000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
24	chr9:17018200-17019200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr9:17018200-17019200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr9:17018200-17019200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr9:17018200-17019200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr9:17018200-17019800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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