Variant report

Variant	rs10963421
Chromosome Location	chr9:18059000-18059001
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs35338418	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6475196	0.80[AMR][1000 genomes]
rs67256698	0.85[AMR][1000 genomes]
rs7855468	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613706	chr9:17718918-18090934	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv613707	chr9:17720175-18070475	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv613708	chr9:17720175-18072085	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1021605	chr9:18002205-18271109	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv892678	chr9:18033944-18082567	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv466280	chr9:18033944-18166112	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv471288	chr9:18033944-18166112	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv613723	chr9:18033944-18166112	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv892679	chr9:18044802-18226609	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18038400-18061600	Weak transcription	Aorta	Aorta
2	chr9:18056000-18059400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr9:18057200-18059000	Weak transcription	Colon Smooth Muscle	Colon
4	chr9:18057200-18059000	Weak transcription	Ovary	ovary
5	chr9:18057200-18059000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr9:18057800-18059000	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr9:18058000-18059800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:18058200-18059200	Enhancers	Fetal Intestine Small	intestine
9	chr9:18058600-18059200	Enhancers	Fetal Intestine Large	intestine
10	chr9:18058800-18059000	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr9:18058800-18059200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr9:18058800-18059200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr9:18058800-18059200	Enhancers	Fetal Lung	lung
14	chr9:18058800-18059200	Enhancers	Stomach Mucosa	stomach
15	chr9:18058800-18059400	Enhancers	Small Intestine	intestine
16	chr9:18059000-18059400	Enhancers	Ovary	ovary
17	chr9:18059000-18059400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
18	chr9:18059000-18059400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
19	chr9:18059000-18059400	Enhancers	Hela-S3	cervix
20	chr9:18059000-18059800	Enhancers	Colon Smooth Muscle	Colon
21	chr9:18059000-18060400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr9:18059000-18060800	Enhancers	Liver	Liver

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