Variant report

Variant	rs10963607
Chromosome Location	chr9:18438373-18438374
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:18436804..18438586-chr9:18439890..18441991,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10963580	1.00[EUR][1000 genomes]
rs73428949	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831522	chr9:18231982-18459492	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv2764161	chr9:18247433-18443060	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv892688	chr9:18385143-18551247	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv1029449	chr9:18414752-18829127	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv540077	chr9:18414752-18829127	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv1030931	chr9:18414752-18903530	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18436600-18439400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr9:18437000-18438600	Enhancers	Placenta	Placenta
3	chr9:18437200-18438400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr9:18437400-18438400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:18437400-18438400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr9:18437400-18439000	Flanking Active TSS	Stomach Smooth Muscle	stomach
7	chr9:18437400-18439200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr9:18437600-18438400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr9:18437600-18438400	Enhancers	NHDF-Ad	bronchial
10	chr9:18437600-18438600	Flanking Active TSS	Hela-S3	cervix
11	chr9:18437600-18438800	Enhancers	Stomach Mucosa	stomach
12	chr9:18437600-18439000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr9:18437600-18439000	Flanking Active TSS	Liver	Liver
14	chr9:18437600-18439200	Flanking Active TSS	Osteobl	bone
15	chr9:18437600-18439400	Flanking Active TSS	HUVEC	blood vessel
16	chr9:18437800-18438400	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr9:18437800-18438400	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr9:18437800-18438400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
19	chr9:18437800-18438400	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr9:18437800-18438400	Flanking Active TSS	Brain Hippocampus Middle	brain
21	chr9:18437800-18438400	Active TSS	Brain Inferior Temporal Lobe	brain
22	chr9:18437800-18438400	Active TSS	Duodenum Mucosa	Duodenum
23	chr9:18437800-18438400	Enhancers	Fetal Brain Male	brain
24	chr9:18437800-18438400	Enhancers	Gastric	stomach
25	chr9:18437800-18438400	Enhancers	Lung	lung
26	chr9:18437800-18438400	Enhancers	Pancreas	Pancrea
27	chr9:18437800-18438400	Enhancers	Placenta Amnion	Placenta Amnion
28	chr9:18437800-18438400	Enhancers	NHEK	skin
29	chr9:18437800-18438600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr9:18437800-18438600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr9:18437800-18439000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr9:18437800-18439000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr9:18437800-18439000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr9:18437800-18439000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
35	chr9:18437800-18439000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr9:18437800-18439000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
37	chr9:18437800-18439000	Flanking Active TSS	HSMM	muscle
38	chr9:18437800-18439000	Flanking Active TSS	NH-A	brain
39	chr9:18437800-18439200	Flanking Active TSS	Adipose Nuclei	Adipose
40	chr9:18437800-18439200	Active TSS	Aorta	Aorta
41	chr9:18437800-18439200	Active TSS	Brain Anterior Caudate	brain
42	chr9:18437800-18439200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
43	chr9:18437800-18439200	Active TSS	Pancreatic Islets	Pancreatic Islet
44	chr9:18437800-18439200	Active TSS	Right Atrium	heart
45	chr9:18438000-18438400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr9:18438000-18438400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr9:18438000-18438400	Flanking Active TSS	Fetal Heart	heart
48	chr9:18438000-18438400	Bivalent/Poised TSS	Fetal Intestine Small	intestine
49	chr9:18438000-18438400	Bivalent Enhancer	Fetal Thymus	thymus
50	chr9:18438000-18438400	Active TSS	Psoas Muscle	Psoas

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