Variant report

Variant	rs10963783
Chromosome Location	chr9:18824677-18824678
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:18824289..18824965-chr9:19028543..19029149,2	MCF-7	breast:
2	chr9:18254775..18255482-chr9:18823832..18824683,3	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10156461	0.85[ASN][1000 genomes]
rs10811041	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10811043	0.87[EUR][1000 genomes]
rs10963784	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10963785	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10963786	0.92[AFR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10963791	0.87[EUR][1000 genomes]
rs12551997	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7019871	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs718452	0.80[ASN][1000 genomes]
rs7869531	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1029449	chr9:18414752-18829127	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv540077	chr9:18414752-18829127	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv1030931	chr9:18414752-18903530	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
7	nsv892692	chr9:18519699-19045502	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv949111	chr9:18758205-18994588	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18788000-18825200	Weak transcription	HUVEC	blood vessel
2	chr9:18806400-18826000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:18815400-18829200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr9:18818000-18825000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr9:18818000-18845200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:18818200-18828800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr9:18818400-18825000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr9:18819000-18825000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:18819000-18825000	Weak transcription	Fetal Muscle Leg	muscle
10	chr9:18819200-18825000	Weak transcription	HSMMtube	muscle
11	chr9:18821600-18825400	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr9:18822000-18826800	Enhancers	Fetal Heart	heart
13	chr9:18822200-18825200	Weak transcription	NH-A	brain
14	chr9:18822600-18825000	Weak transcription	HepG2	liver
15	chr9:18822600-18826000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr9:18822800-18826000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:18823000-18825400	Enhancers	Stomach Mucosa	stomach
18	chr9:18823000-18826400	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr9:18823000-18834400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr9:18823400-18826600	Enhancers	Lung	lung
21	chr9:18823600-18824800	Weak transcription	Duodenum Mucosa	Duodenum
22	chr9:18823600-18825200	Enhancers	Pancreas	Pancrea
23	chr9:18824000-18825000	Weak transcription	Esophagus	oesophagus
24	chr9:18824000-18825200	Enhancers	Gastric	stomach
25	chr9:18824000-18826200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr9:18824000-18827400	Enhancers	Primary T cells from cord blood	blood
27	chr9:18824000-18827800	Enhancers	Fetal Thymus	thymus
28	chr9:18824200-18825200	Enhancers	Osteobl	bone
29	chr9:18824200-18825400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr9:18824200-18825400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr9:18824200-18825400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr9:18824200-18825400	Enhancers	Colon Smooth Muscle	Colon
33	chr9:18824200-18825600	Genic enhancers	NHDF-Ad	bronchial
34	chr9:18824200-18825800	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr9:18824400-18825000	Enhancers	Fetal Stomach	stomach
36	chr9:18824400-18825200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr9:18824400-18825400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr9:18824400-18825400	Genic enhancers	Muscle Satellite Cultured Cells	--
39	chr9:18824400-18825400	Enhancers	Aorta	Aorta
40	chr9:18824400-18825400	Enhancers	Liver	Liver
41	chr9:18824400-18825400	Enhancers	Right Atrium	heart
42	chr9:18824400-18825400	Enhancers	Right Ventricle	heart
43	chr9:18824400-18825400	Enhancers	Sigmoid Colon	Sigmoid Colon
44	chr9:18824400-18825400	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr9:18824400-18825400	Genic enhancers	HSMM	muscle
46	chr9:18824400-18825800	Enhancers	Adipose Nuclei	Adipose
47	chr9:18824400-18826600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr9:18824600-18825000	Weak transcription	NHLF	lung

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