Variant report

Variant	rs10963811
Chromosome Location	chr9:18858366-18858367
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10811051	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10963812	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1978747	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7021809	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7033096	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7855681	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1030931	chr9:18414752-18903530	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv892692	chr9:18519699-19045502	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv949111	chr9:18758205-18994588	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv892698	chr9:18830444-18905289	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18827200-18861600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr9:18845800-18861200	Weak transcription	Aorta	Aorta
3	chr9:18845800-18861800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:18847400-18858400	Weak transcription	NH-A	brain
5	chr9:18847800-18858600	Weak transcription	Gastric	stomach
6	chr9:18849400-18861200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr9:18850800-18860800	Weak transcription	Fetal Stomach	stomach
8	chr9:18851800-18861200	Weak transcription	Fetal Muscle Leg	muscle
9	chr9:18852000-18861200	Weak transcription	Left Ventricle	heart
10	chr9:18852400-18861200	Weak transcription	Right Ventricle	heart
11	chr9:18853600-18861200	Weak transcription	HSMMtube	muscle
12	chr9:18856200-18861200	Weak transcription	Colon Smooth Muscle	Colon
13	chr9:18856200-18861200	Weak transcription	Ovary	ovary
14	chr9:18856800-18858400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr9:18857200-18858600	Genic enhancers	Osteobl	bone
16	chr9:18857200-18858800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr9:18857400-18858600	Genic enhancers	NHDF-Ad	bronchial
18	chr9:18857400-18858800	Enhancers	NHLF	lung
19	chr9:18857600-18858600	Enhancers	Adipose Nuclei	Adipose
20	chr9:18857600-18858800	Genic enhancers	HSMM	muscle
21	chr9:18857800-18859400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:18858000-18858800	Genic enhancers	Muscle Satellite Cultured Cells	--
23	chr9:18858000-18860600	Weak transcription	Fetal Heart	heart
24	chr9:18858000-18860800	Weak transcription	Fetal Lung	lung
25	chr9:18858000-18862000	Weak transcription	HUVEC	blood vessel
26	chr9:18858200-18858400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr9:18858200-18858400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr9:18858200-18858800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr9:18858200-18858800	Enhancers	Lung	lung
30	chr9:18858200-18858800	Enhancers	Right Atrium	heart
31	chr9:18858200-18859400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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