Variant report

Variant	rs10963968
Chromosome Location	chr9:19118771-19118772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:19117804-19125720	HepG2	liver:	n/a	n/a
2	POLR2A	chr9:19118694-19119157	HepG2	liver:	n/a	n/a
3	POLR2A	chr9:19118748-19119681	HUVEC	blood vessel:	n/a	n/a
4	POLR2A	chr9:19112387-19127891	HepG2	liver:	n/a	n/a
5	POLR2A	chr9:19115548-19121870	HepG2	liver:	n/a	n/a
6	POLR2A	chr9:19118723-19118802	HepG2	liver:	n/a	n/a
7	POLR2A	chr9:19117792-19121458	HepG2	liver:	n/a	n/a
8	POLR2A	chr9:19112585-19128688	PBDE	blood:	n/a	n/a
9	GTF3C2	chr9:19118423-19119083	Hela-S3	cervix:	n/a	n/a
10	RPC155	chr9:19118382-19119412	Hela-S3	cervix:	n/a	n/a
11	HEY1	chr9:19117848-19127999	HepG2	liver:	n/a	chr9:19127726-19127741 chr9:19127724-19127739 chr9:19127361-19127376

Variant related genes	Relation type
PLIN2	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10811115	0.94[EUR][1000 genomes]
rs10963945	0.84[EUR][1000 genomes]
rs10963959	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12346435	0.94[EUR][1000 genomes]
rs16937322	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017820	chr9:18882219-19587377	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
2	nsv540078	chr9:18882219-19587377	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
3	nsv892700	chr9:18979441-19156784	Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv1028623	chr9:19034742-19394712	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
5	nsv540079	chr9:19034742-19394712	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
6	nsv430003	chr9:19074740-19247826	Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv870340	chr9:19077714-19143230	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv1018947	chr9:19094894-19394712	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
9	nsv1033552	chr9:19104662-19131866	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:19103400-19120200	Weak transcription	Pancreas	Pancrea
2	chr9:19103400-19126400	Weak transcription	Fetal Brain Male	brain
3	chr9:19103600-19121000	Weak transcription	Right Atrium	heart
4	chr9:19110600-19126400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr9:19112000-19122800	Strong transcription	Primary T cells from cord blood	blood
6	chr9:19113200-19119800	Weak transcription	Brain Angular Gyrus	brain
7	chr9:19113400-19122400	Enhancers	Hela-S3	cervix
8	chr9:19113400-19124400	Strong transcription	Fetal Stomach	stomach
9	chr9:19113400-19126200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr9:19113800-19118800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr9:19113800-19119400	Strong transcription	Fetal Intestine Small	intestine
12	chr9:19113800-19124200	Strong transcription	Fetal Muscle Leg	muscle
13	chr9:19114000-19121600	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:19114000-19122000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr9:19114000-19122400	Strong transcription	Primary T helper cells PMA-I stimulated	--
16	chr9:19114000-19122800	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr9:19114000-19123000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr9:19114000-19123000	Strong transcription	Placenta Amnion	Placenta Amnion
19	chr9:19114000-19124200	Strong transcription	Fetal Intestine Large	intestine
20	chr9:19114000-19124800	Strong transcription	Fetal Muscle Trunk	muscle
21	chr9:19114000-19126000	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr9:19114200-19118800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr9:19114200-19121200	Genic enhancers	Skeletal Muscle Female	skeletal muscle
24	chr9:19114200-19122400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr9:19114200-19124200	Strong transcription	Sigmoid Colon	Sigmoid Colon
26	chr9:19114200-19124800	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr9:19114200-19126200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr9:19114400-19120400	Genic enhancers	Muscle Satellite Cultured Cells	--
29	chr9:19114400-19123200	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr9:19114400-19124000	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr9:19114400-19124000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr9:19114600-19120200	Genic enhancers	Osteobl	bone
33	chr9:19114600-19121400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr9:19114600-19122200	Strong transcription	Duodenum Mucosa	Duodenum
35	chr9:19114600-19123600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr9:19114600-19123600	Strong transcription	Stomach Smooth Muscle	stomach
37	chr9:19114600-19123600	Strong transcription	Spleen	Spleen
38	chr9:19114800-19121200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr9:19114800-19121200	Genic enhancers	NHDF-Ad	bronchial
40	chr9:19114800-19121400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr9:19114800-19123400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr9:19114800-19123600	Strong transcription	Brain Substantia Nigra	brain
43	chr9:19114800-19123600	Strong transcription	Fetal Thymus	thymus
44	chr9:19114800-19124800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr9:19114800-19126000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
46	chr9:19114800-19126000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
47	chr9:19115000-19120400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr9:19115000-19121400	Strong transcription	Primary T killer memory cells from peripheral blood	blood
49	chr9:19115000-19121600	Strong transcription	Brain Cingulate Gyrus	brain
50	chr9:19115000-19121600	Strong transcription	Thymus	Thymus

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