Variant report

Variant	rs10965179
Chromosome Location	chr9:21909000-21909001
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10119704	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10120029	1.00[AMR][1000 genomes]
rs10122387	0.83[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10122573	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10123025	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10123410	1.00[AMR][1000 genomes]
rs10123713	1.00[AMR][1000 genomes]
rs10124950	1.00[AMR][1000 genomes]
rs12349004	1.00[AMR][1000 genomes]
rs12349994	1.00[AMR][1000 genomes]
rs28786432	1.00[AMR][1000 genomes]
rs28826085	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9298827	1.00[AMR][1000 genomes]
rs9298828	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv892745	chr9:21857244-22006273	Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21887200-21919000	Weak transcription	Hela-S3	cervix
2	chr9:21895400-21909400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:21904400-21914000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:21904800-21919400	Weak transcription	NH-A	brain
5	chr9:21905200-21909200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:21905200-21919400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr9:21905400-21909200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr9:21905400-21931000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr9:21905800-21911000	Weak transcription	NHDF-Ad	bronchial
10	chr9:21906600-21913200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr9:21907400-21919400	Weak transcription	Osteobl	bone
12	chr9:21907600-21910000	Weak transcription	Ovary	ovary
13	chr9:21907600-21910800	Weak transcription	Left Ventricle	heart
14	chr9:21908000-21910600	ZNF genes & repeats	Dnd41	blood
15	chr9:21908000-21910800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:21908200-21909200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr9:21908200-21909600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr9:21908200-21909800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr9:21908200-21911000	Strong transcription	HSMM	muscle
20	chr9:21908400-21909000	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr9:21908400-21909400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr9:21909000-21910000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
23	chr9:21909000-21910800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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