Variant report

Variant	rs10967615
Chromosome Location	chr9:26944879-26944880
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:26882668..26884290-chr9:26943587..26946347,2	MCF-7	breast:
2	chr9:26943098..26949574-chr9:26949927..26957421,13	K562	blood:
3	chr9:26863474..26865685-chr9:26944202..26946970,2	K562	blood:

Variant related genes	Relation type
ENSG00000096872	Chromatin interaction
ENSG00000234676	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10283643	0.80[AFR][1000 genomes]
rs10967595	0.80[AFR][1000 genomes]
rs12338678	0.80[AFR][1000 genomes]
rs12345031	0.90[AFR][1000 genomes]
rs12351072	0.93[AFR][1000 genomes]
rs12352400	0.93[AFR][1000 genomes]
rs17694306	0.80[AFR][1000 genomes]
rs41271173	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528614	chr9:26893662-27074233	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26916800-26945200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr9:26925800-26945200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:26926000-26945200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:26926000-26945200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:26926000-26945400	Weak transcription	HSMMtube	muscle
6	chr9:26926600-26945600	Weak transcription	Fetal Kidney	kidney
7	chr9:26927400-26945600	Weak transcription	Fetal Thymus	thymus
8	chr9:26927800-26945600	Weak transcription	Colonic Mucosa	Colon
9	chr9:26928400-26945200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr9:26928400-26945400	Weak transcription	NH-A	brain
11	chr9:26928600-26945000	Weak transcription	Osteobl	bone
12	chr9:26928600-26945600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr9:26932400-26945400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr9:26935200-26945400	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr9:26936400-26945400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr9:26936800-26945200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr9:26936800-26945200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr9:26936800-26945400	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr9:26936800-26945600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr9:26936800-26945600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr9:26936800-26945600	Weak transcription	Aorta	Aorta
22	chr9:26937200-26945200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr9:26938400-26945200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr9:26938400-26945200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr9:26938400-26945400	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr9:26938400-26945400	Weak transcription	Fetal Lung	lung
27	chr9:26938400-26945600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr9:26938600-26945400	Weak transcription	Fetal Intestine Small	intestine
29	chr9:26938600-26945600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr9:26938600-26945600	Weak transcription	Primary B cells from peripheral blood	blood
31	chr9:26938600-26945600	Weak transcription	Fetal Stomach	stomach
32	chr9:26938800-26945400	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr9:26939200-26945200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr9:26939200-26945600	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr9:26939600-26945200	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr9:26939600-26945600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr9:26939600-26945600	Weak transcription	Fetal Intestine Large	intestine
38	chr9:26939800-26945200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr9:26940000-26948400	Active TSS	GM12878-XiMat	blood
40	chr9:26940200-26945200	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr9:26940200-26945600	Enhancers	Primary T helper cells fromperipheralblood	blood
42	chr9:26940400-26945200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr9:26940600-26945200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr9:26940600-26945200	Weak transcription	A549	lung
45	chr9:26940600-26945400	Weak transcription	Primary hematopoietic stem cells	blood
46	chr9:26941400-26945600	Weak transcription	Fetal Muscle Trunk	muscle
47	chr9:26942000-26945400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr9:26942000-26945600	Weak transcription	Fetal Muscle Leg	muscle
49	chr9:26943000-26945600	Weak transcription	Placenta	Placenta
50	chr9:26943000-26946000	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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