Variant report

Variant	rs10967620
Chromosome Location	chr9:26958369-26958370
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:26958344-26958445	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr9:26957364-26958569	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:26885787..26888366-chr9:26956613..26958846,2	MCF-7	breast:
2	chr9:26955666..26957510-chr9:26957953..26960987,3	MCF-7	breast:
3	chr9:26951108..26953952-chr9:26958227..26960200,3	K562	blood:
4	chr9:26956517..26958466-chr9:26969685..26972625,2	MCF-7	breast:
5	chr9:26889862..26894629-chr9:26953159..26958871,9	K562	blood:

Variant related genes	Relation type
ENSG00000234676	TF binding region
ENSG00000120159	Chromatin interaction
ENSG00000096872	Chromatin interaction
ENSG00000234676	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10217666	0.84[AFR][1000 genomes]
rs10967619	1.00[AFR][1000 genomes]
rs10967659	0.84[AFR][1000 genomes]
rs12336174	0.84[AFR][1000 genomes]
rs12336185	0.84[AFR][1000 genomes]
rs12336232	0.84[AFR][1000 genomes]
rs12339708	0.84[AFR][1000 genomes]
rs12340112	0.84[AFR][1000 genomes]
rs12341712	0.84[AFR][1000 genomes]
rs12346926	0.84[AFR][1000 genomes]
rs12348593	0.84[AFR][1000 genomes]
rs13440285	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528614	chr9:26893662-27074233	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv517269	chr9:26945976-27137242	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv892862	chr9:26956663-27190655	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26957000-26961800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:26957000-26973800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr9:26957000-26980800	Weak transcription	Lung	lung
4	chr9:26957000-26983200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr9:26957000-26984400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr9:26957000-27024000	Weak transcription	Esophagus	oesophagus
7	chr9:26957200-26958400	Enhancers	Colon Smooth Muscle	Colon
8	chr9:26957200-26958400	Weak transcription	Hela-S3	cervix
9	chr9:26957200-26958600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr9:26957200-26961400	Weak transcription	Brain Substantia Nigra	brain
11	chr9:26957200-26961600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr9:26957200-26961800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:26957200-26961800	Weak transcription	HSMM	muscle
14	chr9:26957200-26962000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr9:26957200-26962200	Weak transcription	Thymus	Thymus
16	chr9:26957200-26976000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr9:26957200-26980800	Weak transcription	Fetal Intestine Large	intestine
18	chr9:26957200-26980800	Weak transcription	Fetal Stomach	stomach
19	chr9:26957200-26982600	Weak transcription	Fetal Muscle Leg	muscle
20	chr9:26957200-26982600	Weak transcription	Left Ventricle	heart
21	chr9:26957200-26983200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr9:26957200-26983200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr9:26957200-26984400	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr9:26957200-26984400	Weak transcription	Primary B cells from peripheral blood	blood
25	chr9:26957200-26984600	Weak transcription	Fetal Muscle Trunk	muscle
26	chr9:26957200-26984800	Weak transcription	Primary B cells from cord blood	blood
27	chr9:26957200-26984800	Weak transcription	Fetal Thymus	thymus
28	chr9:26957200-27026600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr9:26957200-27040000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr9:26957400-26958400	Enhancers	HepG2	liver
31	chr9:26957400-26961800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr9:26957400-26962000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr9:26957400-26962000	Weak transcription	Liver	Liver
34	chr9:26957400-26962200	Weak transcription	Fetal Lung	lung
35	chr9:26957400-26963800	Weak transcription	NHLF	lung
36	chr9:26957400-26964800	Weak transcription	Primary T cells from cord blood	blood
37	chr9:26957400-26974800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr9:26957400-26978200	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr9:26957400-26980800	Weak transcription	Duodenum Mucosa	Duodenum
40	chr9:26957400-26982800	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr9:26957400-26983200	Weak transcription	Brain Anterior Caudate	brain
42	chr9:26957400-26983400	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr9:26957400-26984600	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr9:26957600-26958400	Enhancers	Fetal Heart	heart
45	chr9:26957600-26959400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr9:26957600-26959400	Weak transcription	HMEC	breast
47	chr9:26957600-26959600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr9:26957600-26959600	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr9:26957600-26959600	Weak transcription	NHDF-Ad	bronchial
50	chr9:26957600-26961400	Weak transcription	GM12878-XiMat	blood

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