Variant report

Variant	rs10968241
Chromosome Location	chr9:2806448-2806449
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:2806397..2808732-chr9:2841740..2844486,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000080608	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10120832	1.00[CEU][hapmap]
rs10967690	1.00[CEU][hapmap]
rs12001445	1.00[CEU][hapmap]
rs16910644	1.00[CEU][hapmap]
rs35825481	1.00[EUR][1000 genomes]
rs58317425	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73377844	1.00[EUR][1000 genomes]
rs73377846	1.00[EUR][1000 genomes]
rs763578	1.00[CEU][hapmap]
rs7848733	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530929	chr9:1998911-2925112	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv916750	chr9:2430846-2826706	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1017581	chr9:2494815-3172020	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv539934	chr9:2494815-3172020	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv892079	chr9:2681430-2931341	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv892081	chr9:2691186-2851026	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv892082	chr9:2699606-2833267	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv1024262	chr9:2703159-3067931	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
9	nsv1028011	chr9:2759097-2904277	Enhancers Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
10	nsv1022873	chr9:2768825-2863264	Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:2787600-2808000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:2787800-2812200	Strong transcription	Fetal Muscle Trunk	muscle
3	chr9:2788400-2809400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr9:2789000-2809000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:2791600-2815800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr9:2791800-2821800	Strong transcription	Primary T cells from cord blood	blood
7	chr9:2792000-2808600	Strong transcription	H1 Cell Line	embryonic stem cell
8	chr9:2792000-2809400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr9:2792000-2822200	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr9:2792200-2813000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:2792800-2808600	Strong transcription	HSMM	muscle
12	chr9:2792800-2809600	Strong transcription	Liver	Liver
13	chr9:2793000-2808200	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr9:2793200-2826600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr9:2793400-2814200	Strong transcription	Primary T helper cells PMA-I stimulated	--
16	chr9:2793600-2808400	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr9:2794000-2808600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr9:2794400-2807400	Strong transcription	ES-I3 Cell Line	embryonic stem cell
19	chr9:2794400-2814800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr9:2795200-2817600	Weak transcription	Stomach Mucosa	stomach
21	chr9:2795400-2814000	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr9:2795800-2809800	Strong transcription	Fetal Intestine Large	intestine
23	chr9:2796000-2808600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
24	chr9:2796400-2822200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr9:2796600-2808800	Strong transcription	Adipose Nuclei	Adipose
26	chr9:2796600-2813200	Strong transcription	Duodenum Mucosa	Duodenum
27	chr9:2796800-2812600	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr9:2797000-2806800	Strong transcription	Duodenum Smooth Muscle	Duodenum
29	chr9:2797600-2813400	Strong transcription	Primary B cells from peripheral blood	blood
30	chr9:2797600-2813600	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr9:2797800-2813000	Strong transcription	Dnd41	blood
32	chr9:2797800-2813800	Strong transcription	Primary B cells from cord blood	blood
33	chr9:2797800-2813800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr9:2798000-2806600	Strong transcription	Fetal Thymus	thymus
35	chr9:2798000-2807200	Strong transcription	HepG2	liver
36	chr9:2798000-2808000	Strong transcription	Fetal Lung	lung
37	chr9:2798000-2837400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr9:2798400-2812600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr9:2798800-2811600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr9:2799000-2807600	Weak transcription	Fetal Heart	heart
41	chr9:2799000-2808800	Strong transcription	Fetal Muscle Leg	muscle
42	chr9:2799000-2809000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr9:2799400-2808600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr9:2799800-2808600	Strong transcription	NHDF-Ad	bronchial
45	chr9:2800000-2809000	Strong transcription	Placenta	Placenta
46	chr9:2800200-2809200	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr9:2800200-2812000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr9:2800400-2808800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr9:2801000-2808400	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr9:2801200-2808600	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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