Variant report

Variant	rs10975432
Chromosome Location	chr9:6098003-6098004
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10975422	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10975429	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10975431	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10975444	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10975445	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10975450	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10975452	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12377511	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12378311	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13287430	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13289987	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13290080	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13294420	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13299104	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13302455	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1576463	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34133170	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34916503	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35829914	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56705560	0.80[ASN][1000 genomes]
rs7852365	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs986295	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948847	chr9:5712626-6417677	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1031086	chr9:5806949-6630686	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv539967	chr9:5806949-6630686	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv1015450	chr9:5915640-6114652	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv613205	chr9:6032924-6332901	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv916394	chr9:6055497-6322471	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv2761482	chr9:6084602-6134787	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv892157	chr9:6093790-6322415	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:6091000-6098200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr9:6096400-6099400	Enhancers	NHEK	skin
3	chr9:6096400-6100000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:6096400-6100200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:6096400-6100200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr9:6096400-6100400	Enhancers	HMEC	breast
7	chr9:6096600-6099000	Enhancers	Osteobl	bone
8	chr9:6096600-6099200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:6096600-6099200	Enhancers	NHDF-Ad	bronchial
10	chr9:6096600-6100200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr9:6096800-6098400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:6097200-6098400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr9:6098000-6098800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr9:6098000-6099200	Enhancers	HUVEC	blood vessel

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