Variant report

Variant	rs10975584
Chromosome Location	chr9:6421445-6421446
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:6412168..6415418-chr9:6418500..6425043,7	MCF-7	breast:
2	chr9:6411739..6415458-chr9:6420668..6426596,8	K562	blood:
3	chr9:6413231..6415998-chr9:6419721..6423966,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147854	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10975589	1.00[EUR][1000 genomes]
rs10975594	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10975602	1.00[EUR][1000 genomes]
rs10975606	1.00[EUR][1000 genomes]
rs2295843	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031086	chr9:5806949-6630686	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv539967	chr9:5806949-6630686	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv933124	chr9:6099101-6644738	Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv1029000	chr9:6188652-6687205	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
5	nsv1031459	chr9:6216913-6657192	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv948562	chr9:6222553-6684955	Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
7	nsv1032350	chr9:6328167-6630686	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	nsv892160	chr9:6364449-6506038	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
9	nsv892161	chr9:6364449-6523056	Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
10	nsv831497	chr9:6377501-6612402	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:6414400-6427400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:6414600-6439400	Weak transcription	Colonic Mucosa	Colon
3	chr9:6414600-6449000	Weak transcription	Gastric	stomach
4	chr9:6414600-6449200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:6414600-6451800	Weak transcription	Esophagus	oesophagus
6	chr9:6414600-6477800	Weak transcription	Placenta	Placenta
7	chr9:6414800-6422000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr9:6415400-6425400	Weak transcription	Psoas Muscle	Psoas
9	chr9:6415400-6434000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr9:6415600-6422000	Weak transcription	Fetal Kidney	kidney
11	chr9:6415600-6422200	Weak transcription	Lung	lung
12	chr9:6415600-6423200	Weak transcription	Stomach Mucosa	stomach
13	chr9:6415600-6430000	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr9:6415600-6431000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:6415600-6441200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr9:6415600-6471400	Weak transcription	Aorta	Aorta
17	chr9:6415800-6442800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr9:6416000-6438400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr9:6416400-6429800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr9:6416400-6430000	Weak transcription	Spleen	Spleen
21	chr9:6416400-6430600	Weak transcription	Right Ventricle	heart
22	chr9:6416400-6449200	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr9:6417000-6422200	Weak transcription	Fetal Stomach	stomach
24	chr9:6417200-6422200	Weak transcription	Brain Germinal Matrix	brain
25	chr9:6417400-6424600	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr9:6417400-6434400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr9:6417600-6430600	Weak transcription	HSMM	muscle
28	chr9:6417600-6437800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr9:6417800-6422200	Weak transcription	NHLF	lung
30	chr9:6417800-6425800	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr9:6417800-6426000	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr9:6417800-6428600	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr9:6417800-6428800	Weak transcription	K562	blood
34	chr9:6417800-6440000	Weak transcription	Fetal Brain Female	brain
35	chr9:6418000-6422000	Weak transcription	NH-A	brain
36	chr9:6418000-6426400	Weak transcription	HSMMtube	muscle
37	chr9:6418000-6438200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr9:6418200-6422000	Weak transcription	Primary hematopoietic stem cells	blood
39	chr9:6418200-6424600	Weak transcription	Fetal Heart	heart
40	chr9:6418200-6427000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr9:6418200-6428600	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr9:6418600-6422000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr9:6418800-6425800	Weak transcription	NHDF-Ad	bronchial
44	chr9:6418800-6430600	Weak transcription	Brain Hippocampus Middle	brain
45	chr9:6419000-6424000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr9:6419000-6425400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr9:6419000-6428600	Weak transcription	Duodenum Mucosa	Duodenum
48	chr9:6419000-6437000	Weak transcription	Fetal Brain Male	brain
49	chr9:6419200-6421600	Weak transcription	Osteobl	bone
50	chr9:6419200-6425000	Weak transcription	Adipose Nuclei	Adipose

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