Variant report

Variant	rs10975615
Chromosome Location	chr9:6510453-6510454
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12001457	0.87[EUR][1000 genomes]
rs12350603	0.84[EUR][1000 genomes]
rs73399085	0.80[EUR][1000 genomes]
rs73401017	0.80[EUR][1000 genomes]
rs9657632	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031086	chr9:5806949-6630686	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv539967	chr9:5806949-6630686	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv933124	chr9:6099101-6644738	Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv1029000	chr9:6188652-6687205	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
5	nsv1031459	chr9:6216913-6657192	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv948562	chr9:6222553-6684955	Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
7	nsv1032350	chr9:6328167-6630686	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	nsv892161	chr9:6364449-6523056	Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
9	nsv831497	chr9:6377501-6612402	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
10	nsv1029766	chr9:6437020-6523605	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
11	nsv892162	chr9:6480005-6788085	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
12	nsv831498	chr9:6496021-6689728	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
13	esv2761298	chr9:6505897-6544766	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
14	nsv526323	chr9:6508149-6510453	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:6463600-6518400	Weak transcription	Fetal Brain Male	brain
2	chr9:6475800-6510800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr9:6477800-6511000	Weak transcription	Fetal Heart	heart
4	chr9:6487600-6510600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr9:6495200-6510800	Strong transcription	Fetal Thymus	thymus
6	chr9:6495400-6510600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr9:6495400-6511400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr9:6498800-6554400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr9:6499000-6511400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:6499000-6528400	Weak transcription	Pancreas	Pancrea
11	chr9:6500800-6517400	Weak transcription	Esophagus	oesophagus
12	chr9:6502200-6513600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr9:6502600-6512200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr9:6502600-6512400	Weak transcription	Aorta	Aorta
15	chr9:6505600-6517200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr9:6506200-6518600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr9:6506400-6517200	Weak transcription	Lung	lung
18	chr9:6506400-6521800	Weak transcription	Colon Smooth Muscle	Colon
19	chr9:6506400-6530600	Weak transcription	Gastric	stomach
20	chr9:6506600-6512200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr9:6506800-6510600	Strong transcription	NHDF-Ad	bronchial
22	chr9:6506800-6511000	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr9:6506800-6519200	Weak transcription	Fetal Kidney	kidney
24	chr9:6507000-6511200	Strong transcription	Muscle Satellite Cultured Cells	--
25	chr9:6507000-6512000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr9:6507000-6512200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr9:6507000-6512400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr9:6507000-6512400	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr9:6507000-6515800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr9:6507000-6523800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr9:6507000-6524800	Weak transcription	Brain Hippocampus Middle	brain
32	chr9:6507000-6534400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr9:6507200-6510600	Strong transcription	NH-A	brain
34	chr9:6507200-6512000	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr9:6507200-6522400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr9:6507400-6512200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr9:6507400-6512200	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr9:6507400-6514800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr9:6507800-6521800	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr9:6508000-6511600	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr9:6508000-6516000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr9:6508000-6517400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr9:6508000-6520200	Weak transcription	Fetal Intestine Small	intestine
44	chr9:6508200-6513800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr9:6508200-6519400	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr9:6508200-6521800	Weak transcription	Fetal Stomach	stomach
47	chr9:6508400-6510600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr9:6508400-6510800	Weak transcription	Thymus	Thymus
49	chr9:6508400-6510800	Weak transcription	Spleen	Spleen
50	chr9:6508400-6511000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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