Variant report

Variant	rs10976028
Chromosome Location	chr9:7077178-7077179
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:7070852..7073798-chr9:7075026..7077389,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10975968	1.00[CHB][hapmap]
rs10975996	1.00[CHB][hapmap]
rs10975998	1.00[CHB][hapmap]
rs10975999	1.00[CHB][hapmap]
rs10976000	1.00[CHB][hapmap]
rs10976006	1.00[CHB][hapmap]
rs10976010	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs10976017	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10976021	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10976023	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10976025	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10976027	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10976033	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11562279	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892166	chr9:6602821-7222495	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1023906	chr9:6731786-7372132	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv466117	chr9:7030268-7084558	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv613258	chr9:7030268-7084558	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv613259	chr9:7032776-7541338	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1015874	chr9:7048807-7434890	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv539971	chr9:7048807-7434890	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
8	nsv869932	chr9:7068359-7133384	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7009200-7077600	Weak transcription	Osteobl	bone
2	chr9:7012200-7111200	Weak transcription	Colonic Mucosa	Colon
3	chr9:7028800-7086400	Weak transcription	Right Ventricle	heart
4	chr9:7029000-7077400	Weak transcription	Gastric	stomach
5	chr9:7029000-7081200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:7034000-7103600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr9:7043400-7103600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr9:7050000-7082200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr9:7051600-7103200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr9:7052600-7086400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:7053000-7086600	Weak transcription	Fetal Intestine Large	intestine
12	chr9:7053200-7084400	Weak transcription	Brain Hippocampus Middle	brain
13	chr9:7053200-7099200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr9:7054400-7077400	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr9:7058400-7088600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr9:7058600-7085000	Weak transcription	Brain Anterior Caudate	brain
17	chr9:7059400-7082000	Weak transcription	Fetal Stomach	stomach
18	chr9:7059600-7078800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr9:7061200-7104600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr9:7061600-7103600	Weak transcription	Spleen	Spleen
21	chr9:7062800-7096400	Weak transcription	Fetal Intestine Small	intestine
22	chr9:7065600-7077800	Weak transcription	NH-A	brain
23	chr9:7066200-7096200	Weak transcription	Stomach Mucosa	stomach
24	chr9:7067000-7088000	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr9:7067200-7082600	Strong transcription	Primary B cells from peripheral blood	blood
26	chr9:7067200-7103600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr9:7068400-7103600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr9:7071200-7087400	Strong transcription	Primary B cells from cord blood	blood
29	chr9:7072000-7082200	Weak transcription	Small Intestine	intestine
30	chr9:7072000-7088600	Strong transcription	Primary T cells from cord blood	blood
31	chr9:7072200-7080800	Weak transcription	Fetal Heart	heart
32	chr9:7073600-7099200	Weak transcription	NHEK	skin
33	chr9:7074600-7077200	Weak transcription	Brain Substantia Nigra	brain
34	chr9:7074600-7079400	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr9:7074600-7089800	Weak transcription	Fetal Muscle Trunk	muscle
36	chr9:7074800-7078400	Strong transcription	GM12878-XiMat	blood
37	chr9:7074800-7078800	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr9:7074800-7079200	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr9:7074800-7079400	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr9:7075000-7078000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
41	chr9:7075000-7081800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr9:7075000-7097800	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr9:7075200-7077800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr9:7075200-7078200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr9:7075200-7082800	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr9:7075400-7078000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr9:7075400-7080800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr9:7075400-7086400	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr9:7075400-7088400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr9:7075600-7077200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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