Variant report

Variant	rs10976593
Chromosome Location	chr9:7811060-7811061
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10123827	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[EUR][1000 genomes]
rs10976584	1.00[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10976585	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10976586	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10976587	1.00[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10976591	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10976595	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10976597	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10976598	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12238126	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1332923	1.00[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap];0.93[EUR][1000 genomes]
rs2210522	0.84[ASN][1000 genomes]
rs2297554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72697242	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72697244	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72697248	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72697262	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72697263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72697264	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7470720	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033077	chr9:7358832-7990735	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv539977	chr9:7358832-7990735	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv613266	chr9:7588854-7901308	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv995116	chr9:7682729-8065192	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv892213	chr9:7770942-7856992	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv892214	chr9:7774180-7822486	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv892215	chr9:7799787-7889991	Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7809000-7811400	Enhancers	Thymus	Thymus
2	chr9:7809600-7812200	Enhancers	Fetal Thymus	thymus
3	chr9:7809800-7811600	Enhancers	Rectal Mucosa Donor 29	rectum
4	chr9:7809800-7811600	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr9:7810600-7812800	Enhancers	Stomach Mucosa	stomach
6	chr9:7810800-7811400	Enhancers	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links