Variant report

Variant	rs10976672
Chromosome Location	chr9:7922137-7922138
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10118580	0.98[ASN][1000 genomes]
rs10125479	0.97[ASN][1000 genomes]
rs10815713	0.81[EUR][1000 genomes]
rs10976663	0.89[EUR][1000 genomes]
rs10976673	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12685699	0.89[EUR][1000 genomes]
rs1322382	0.94[ASN][1000 genomes]
rs1322477	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1343803	0.92[ASN][1000 genomes]
rs1407462	1.00[ASN][1000 genomes]
rs1407465	0.85[EUR][1000 genomes]
rs1535481	1.00[ASN][1000 genomes]
rs1535482	0.98[ASN][1000 genomes]
rs2381678	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2381679	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28588541	0.96[ASN][1000 genomes]
rs4740922	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7024845	1.00[ASN][1000 genomes]
rs7036095	0.85[ASN][1000 genomes]
rs7037011	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7041013	0.94[ASN][1000 genomes]
rs7047580	0.88[EUR][1000 genomes]
rs73640560	0.96[ASN][1000 genomes]
rs7874150	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033077	chr9:7358832-7990735	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv539977	chr9:7358832-7990735	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv995116	chr9:7682729-8065192	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv973468	chr9:7871815-7950706	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1024456	chr9:7887727-8157591	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv539979	chr9:7887727-8157591	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv892216	chr9:7910934-7985651	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv892217	chr9:7919153-7978514	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7917600-7922200	Weak transcription	Stomach Mucosa	stomach
2	chr9:7921600-7922200	Enhancers	Fetal Thymus	thymus
3	chr9:7921600-7922400	Enhancers	Thymus	Thymus
4	chr9:7921600-7922800	Enhancers	Primary B cells from peripheral blood	blood
5	chr9:7921600-7923000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr9:7921800-7922200	Flanking Active TSS	Primary B cells from cord blood	blood
7	chr9:7921800-7923200	Enhancers	Fetal Brain Male	brain
8	chr9:7922000-7922400	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr9:7922000-7922400	Enhancers	Brain Cingulate Gyrus	brain
10	chr9:7922000-7922400	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr9:7922000-7922400	Enhancers	Fetal Brain Female	brain
12	chr9:7922000-7922600	Enhancers	Brain Anterior Caudate	brain
13	chr9:7922000-7922600	Enhancers	Brain Substantia Nigra	brain
14	chr9:7922000-7922600	Enhancers	Fetal Heart	heart
15	chr9:7922000-7922800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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