Variant report

Variant	rs10977037
Chromosome Location	chr9:8393996-8393997
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10815848	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10815850	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10977028	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10977032	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10977054	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10977069	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10977075	1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10977207	1.00[ASW][hapmap]
rs12156512	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12344067	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1359117	1.00[JPT][hapmap]
rs7020035	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7040624	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7041166	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.86[MEX][hapmap];0.96[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7044042	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10977037	FAM190A	trans	parietal	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8339600-8397600	Weak transcription	Fetal Muscle Leg	muscle
2	chr9:8361400-8401600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr9:8364800-8401600	Weak transcription	Brain Germinal Matrix	brain
4	chr9:8365000-8395400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:8367200-8394600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr9:8367200-8399800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr9:8373000-8402200	Weak transcription	Fetal Kidney	kidney
8	chr9:8374000-8394400	Weak transcription	Fetal Heart	heart
9	chr9:8376800-8401800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:8377800-8406400	Weak transcription	Fetal Brain Female	brain
11	chr9:8383600-8405200	Weak transcription	Aorta	Aorta
12	chr9:8384200-8394600	Weak transcription	Left Ventricle	heart
13	chr9:8385200-8401400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr9:8387000-8394600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr9:8387600-8394800	Weak transcription	Brain Hippocampus Middle	brain
16	chr9:8387800-8398800	Weak transcription	Ovary	ovary
17	chr9:8388000-8402000	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr9:8388400-8394400	Weak transcription	Brain Anterior Caudate	brain
19	chr9:8389600-8451000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr9:8389800-8394800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr9:8392600-8394000	Enhancers	Fetal Lung	lung
22	chr9:8393400-8395600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr9:8393800-8395000	Enhancers	Brain Angular Gyrus	brain
24	chr9:8393800-8397400	Enhancers	Brain Cingulate Gyrus	brain

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