Variant report

Variant	rs10977192
Chromosome Location	chr9:8539678-8539679
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10123125	0.86[CEU][hapmap];0.84[CHB][hapmap];0.87[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10123138	0.86[CEU][hapmap];0.83[CHB][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10217685	0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs10511499	0.85[CHB][hapmap]
rs10758978	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10758979	0.85[CEU][hapmap];0.85[CHB][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10758980	0.86[CEU][hapmap];0.85[CHB][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10815883	0.85[CHB][hapmap]
rs10815890	0.92[CHB][hapmap]
rs10815898	0.80[ASN][1000 genomes]
rs10815900	1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10815905	0.82[AMR][1000 genomes]
rs10815906	0.85[CEU][hapmap];0.85[CHB][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10815907	0.86[CEU][hapmap];0.85[CHB][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10815908	0.93[CEU][hapmap];0.85[CHB][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10977181	0.86[CEU][hapmap];0.84[AMR][1000 genomes]
rs10977189	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10977196	0.83[AMR][1000 genomes]
rs12340211	0.85[CHB][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12344975	0.86[CEU][hapmap];0.85[CHB][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3763652	0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs3763653	0.82[ASN][1000 genomes]
rs7019398	0.92[CHB][hapmap]
rs7864841	0.83[ASN][1000 genomes]
rs7868790	0.92[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031472	chr9:8250901-8712547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv892228	chr9:8482778-8703733	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv831504	chr9:8496277-8665773	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1026208	chr9:8534915-8595338	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv528345	chr9:8538919-8554938	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8420600-8557600	Weak transcription	Aorta	Aorta
2	chr9:8518400-8555200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr9:8533400-8552200	Weak transcription	Fetal Brain Male	brain
4	chr9:8534600-8564000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr9:8536600-8540000	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr9:8537000-8550200	Weak transcription	Fetal Brain Female	brain
7	chr9:8538000-8541000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr9:8538000-8542200	Weak transcription	Brain Hippocampus Middle	brain
9	chr9:8538000-8542400	Weak transcription	Brain Anterior Caudate	brain
10	chr9:8538000-8542600	Weak transcription	Brain Angular Gyrus	brain
11	chr9:8538800-8540600	Enhancers	Brain Substantia Nigra	brain
12	chr9:8539000-8542600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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