Variant report

Variant	rs10979219
Chromosome Location	chr9:110881731-110881732
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110881188..110882783-chr9:110891390..110893393,2	MCF-7	breast:
2	chr9:110248109..110252233-chr9:110878259..110882011,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136826	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10115125	0.87[EUR][1000 genomes]
rs10512364	0.87[EUR][1000 genomes]
rs10512365	0.87[EUR][1000 genomes]
rs10816634	0.89[EUR][1000 genomes]
rs10816635	0.87[EUR][1000 genomes]
rs10816636	0.86[EUR][1000 genomes]
rs10979213	1.00[CHB][hapmap]
rs10979222	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10979226	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10979227	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10979229	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10979230	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10979231	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10979232	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10979233	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10979234	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10979236	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10979237	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10979238	0.89[EUR][1000 genomes]
rs10979239	0.90[CEU][hapmap];0.89[EUR][1000 genomes]
rs10979242	0.90[CEU][hapmap];0.89[EUR][1000 genomes]
rs10979243	0.90[CEU][hapmap];0.89[EUR][1000 genomes]
rs10979244	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs10979245	0.90[CEU][hapmap];0.89[EUR][1000 genomes]
rs10979246	0.90[CEU][hapmap];0.92[TSI][hapmap];0.89[EUR][1000 genomes]
rs10979247	0.89[EUR][1000 genomes]
rs10979248	0.89[EUR][1000 genomes]
rs10979249	0.89[EUR][1000 genomes]
rs10979250	0.88[EUR][1000 genomes]
rs10979251	0.87[EUR][1000 genomes]
rs12376798	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12379956	0.90[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12379962	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12380087	0.89[EUR][1000 genomes]
rs12380317	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1434838	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1434839	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1434840	0.90[CEU][hapmap];0.89[EUR][1000 genomes]
rs1434841	0.90[CEU][hapmap];0.89[EUR][1000 genomes]
rs1434842	0.90[CEU][hapmap];0.89[EUR][1000 genomes]
rs1836459	0.90[CEU][hapmap];0.89[EUR][1000 genomes]
rs2053148	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2117466	0.85[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28496063	0.87[EUR][1000 genomes]
rs34006249	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34137313	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34223168	0.86[EUR][1000 genomes]
rs34793195	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35338365	0.89[EUR][1000 genomes]
rs7020611	0.90[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7026944	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7033853	0.90[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7047840	0.90[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7048206	0.90[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71497826	0.89[EUR][1000 genomes]
rs7873138	1.00[CHB][hapmap];1.00[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10979219	OR13C2	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110868600-110899800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:110876800-110883800	Weak transcription	K562	blood
3	chr9:110878200-110883000	Enhancers	Stomach Mucosa	stomach
4	chr9:110880200-110881800	Enhancers	Esophagus	oesophagus
5	chr9:110880400-110882200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr9:110881600-110882000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:110881600-110882000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr9:110881600-110882000	Enhancers	HMEC	breast
9	chr9:110881600-110882400	Enhancers	Pancreas	Pancrea
10	chr9:110881600-110883000	Enhancers	Gastric	stomach

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