Variant report

Variant	rs1097964
Chromosome Location	chr12:123159426-123159427
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12824888	1.00[ASN][1000 genomes]
rs2133632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2133633	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34023619	1.00[ASN][1000 genomes]
rs34263900	1.00[ASN][1000 genomes]
rs34371863	1.00[ASN][1000 genomes]
rs35296629	1.00[ASN][1000 genomes]
rs35576166	1.00[ASN][1000 genomes]
rs36103570	1.00[ASN][1000 genomes]
rs486036	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs515431	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs527877	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs642895	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs645987	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs838778	0.99[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:123154800-123163200	Weak transcription	Osteobl	bone
2	chr12:123155200-123161800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr12:123155800-123163000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr12:123157400-123163200	Weak transcription	HepG2	liver
5	chr12:123157800-123163600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr12:123158800-123161800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links