Variant report

Variant	rs10981699
Chromosome Location	chr9:115995901-115995902
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:115990891..115993253-chr9:115993931..115999009,4	K562	blood:
2	chr9:115991545..115993932-chr9:115995693..115997298,2	K562	blood:
3	chr9:115986078..115988319-chr9:115992917..115996032,3	MCF-7	breast:
4	chr9:115995531..115997450-chr9:115998162..116001080,2	MCF-7	breast:
5	chr9:115983851..115985489-chr9:115994207..115996988,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136868	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10981694	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10981704	0.84[JPT][hapmap]
rs41280225	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758198	chr9:115240454-116002951	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	esv2759710	chr9:115240454-116002951	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
4	nsv1035406	chr9:115883978-116003980	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv540201	chr9:115883978-116003980	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv1042663	chr9:115920158-116167140	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
7	nsv893744	chr9:115934852-116170227	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
8	nsv893745	chr9:115955271-116005783	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv1041112	chr9:115960704-116005783	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv893746	chr9:115983540-116022826	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:115985000-115996200	Weak transcription	Brain Substantia Nigra	brain
2	chr9:115985000-116020800	Weak transcription	Aorta	Aorta
3	chr9:115985200-115998000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:115985200-116001800	Weak transcription	Pancreas	Pancrea
5	chr9:115985600-115997600	Weak transcription	Brain Germinal Matrix	brain
6	chr9:115985600-116020800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr9:115985800-116018400	Weak transcription	NHEK	skin
8	chr9:115985800-116019000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:115985800-116021000	Weak transcription	Fetal Stomach	stomach
10	chr9:115986400-116013000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr9:115987600-115998600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:115987600-116017800	Weak transcription	Fetal Muscle Trunk	muscle
13	chr9:115987600-116018200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:115987800-116011000	Weak transcription	A549	lung
15	chr9:115987800-116021000	Weak transcription	Hela-S3	cervix
16	chr9:115989000-116019200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr9:115989200-116005600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr9:115990800-115996200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr9:115991000-116011600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr9:115992800-115996200	Weak transcription	Lung	lung
21	chr9:115994000-115996000	Enhancers	HepG2	liver
22	chr9:115994600-115996000	Enhancers	Primary B cells from peripheral blood	blood
23	chr9:115994600-115996200	Enhancers	Primary hematopoietic stem cells	blood
24	chr9:115994600-115996400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr9:115994600-115996400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
26	chr9:115994800-115996200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr9:115994800-115996200	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr9:115995000-115996000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr9:115995000-115996000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr9:115995000-115996200	Flanking Active TSS	GM12878-XiMat	blood
31	chr9:115995000-115996200	Enhancers	NHLF	lung
32	chr9:115995200-115996000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr9:115995200-115996000	Enhancers	Osteobl	bone
34	chr9:115995200-115996200	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr9:115995200-115996200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr9:115995200-115996200	Enhancers	Fetal Lung	lung
37	chr9:115995200-115996400	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr9:115995200-115996400	Enhancers	Adipose Nuclei	Adipose
39	chr9:115995200-115996600	Enhancers	Stomach Mucosa	stomach
40	chr9:115995200-116017800	Weak transcription	Left Ventricle	heart
41	chr9:115995400-115996000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
42	chr9:115995400-115996000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr9:115995400-115996000	Flanking Active TSS	HUVEC	blood vessel
44	chr9:115995400-115996200	Enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr9:115995400-115996400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr9:115995400-115996400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr9:115995400-115996600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
48	chr9:115995400-116009200	Weak transcription	K562	blood
49	chr9:115995400-116018000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr9:115995600-115996000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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