Variant report

Variant	rs10981722
Chromosome Location	chr9:116057881-116057882
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:116057494..116059760-chr9:116060068..116061932,2	K562	blood:
2	chr9:116057020..116059626-chr9:116062795..116064510,2	K562	blood:
3	chr9:116035504..116039547-chr9:116056957..116059661,4	K562	blood:
4	chr9:116056474..116058317-chr9:116067548..116069839,2	K562	blood:
5	chr9:116036613..116039490-chr9:116057156..116059661,3	K562	blood:
6	chr9:116054929..116058723-chr9:116059143..116063371,5	MCF-7	breast:
7	chr9:116036740..116039923-chr9:116057646..116061284,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165188	Chromatin interaction
ENSG00000176386	Chromatin interaction
ENSG00000136875	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10981636	1.00[JPT][hapmap]
rs12236875	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs60326103	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530949	chr9:115821128-116487796	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1042663	chr9:115920158-116167140	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv893744	chr9:115934852-116170227	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116038800-116060000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:116039000-116058200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:116050000-116062000	Weak transcription	Stomach Mucosa	stomach
4	chr9:116054200-116065000	Weak transcription	Fetal Kidney	kidney
5	chr9:116054600-116065200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr9:116054800-116058000	Weak transcription	Lung	lung
7	chr9:116054800-116058400	Weak transcription	Ovary	ovary
8	chr9:116054800-116058600	Weak transcription	HSMMtube	muscle
9	chr9:116054800-116059600	Weak transcription	Small Intestine	intestine
10	chr9:116054800-116060600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:116054800-116062200	Weak transcription	Colonic Mucosa	Colon
12	chr9:116054800-116062200	Weak transcription	Pancreas	Pancrea
13	chr9:116054800-116065200	Weak transcription	Esophagus	oesophagus
14	chr9:116055000-116058000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr9:116055000-116058000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr9:116055000-116060200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr9:116055000-116063800	Weak transcription	Spleen	Spleen
18	chr9:116055200-116058200	Weak transcription	Brain Anterior Caudate	brain
19	chr9:116055200-116058200	Weak transcription	K562	blood
20	chr9:116055200-116085200	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr9:116055400-116058600	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr9:116055600-116059400	Weak transcription	Hela-S3	cervix
23	chr9:116055600-116060000	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr9:116055600-116062200	Weak transcription	A549	lung
25	chr9:116055800-116058400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr9:116055800-116058600	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr9:116055800-116059600	Weak transcription	Adipose Nuclei	Adipose
28	chr9:116055800-116061600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr9:116055800-116061800	Weak transcription	Duodenum Mucosa	Duodenum
30	chr9:116055800-116062000	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr9:116056000-116058000	Weak transcription	Fetal Intestine Small	intestine
32	chr9:116056000-116058000	Weak transcription	HepG2	liver
33	chr9:116056000-116058200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr9:116056000-116058200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr9:116056000-116058400	Weak transcription	NHEK	skin
36	chr9:116056000-116058600	Weak transcription	Osteobl	bone
37	chr9:116056000-116059000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr9:116056000-116059400	Weak transcription	NHLF	lung
39	chr9:116056000-116061000	Weak transcription	HSMM	muscle
40	chr9:116056000-116061200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr9:116056000-116062000	Weak transcription	Gastric	stomach
42	chr9:116056000-116087000	Weak transcription	Thymus	Thymus
43	chr9:116056200-116058000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr9:116056200-116058000	Weak transcription	Brain Hippocampus Middle	brain
45	chr9:116056200-116058200	Weak transcription	HMEC	breast
46	chr9:116056200-116058400	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr9:116056200-116058600	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr9:116056200-116058800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr9:116056200-116059200	Weak transcription	Stomach Smooth Muscle	stomach
50	chr9:116056200-116060600	Weak transcription	Brain Germinal Matrix	brain

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