Variant report

Variant	rs10981993
Chromosome Location	chr9:116648316-116648317
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:116646332..116648857-chr9:116689708..116691709,2	K562	blood:
2	chr9:116647094..116648726-chr9:116655272..116657575,2	K562	blood:
3	chr9:116641182..116644797-chr9:116645893..116648885,3	MCF-7	breast:
4	chr9:116637356..116640118-chr9:116647677..116650674,3	MCF-7	breast:
5	chr9:116646398..116649591-chr9:116652096..116654192,3	K562	blood:
6	chr9:116646875..116648499-chr9:116655212..116658184,3	MCF-7	breast:
7	chr9:116638072..116644235-chr9:116644601..116650376,14	K562	blood:
8	chr9:116646366..116648673-chr9:116669994..116672714,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000157657	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10759662	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116639200-116652800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:116639200-116663400	Weak transcription	Gastric	stomach
3	chr9:116639600-116648400	Weak transcription	Colonic Mucosa	Colon
4	chr9:116639800-116648400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr9:116639800-116648400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr9:116640800-116648400	Weak transcription	HSMMtube	muscle
7	chr9:116642000-116649400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr9:116642600-116648600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr9:116644600-116650400	Weak transcription	Brain Germinal Matrix	brain
10	chr9:116645000-116649000	Weak transcription	Fetal Kidney	kidney
11	chr9:116646400-116648400	Enhancers	Psoas Muscle	Psoas
12	chr9:116646800-116648400	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr9:116646800-116648600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr9:116646800-116648600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr9:116646800-116649000	Enhancers	Fetal Heart	heart
16	chr9:116646800-116649200	Flanking Active TSS	K562	blood
17	chr9:116646800-116649800	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr9:116646800-116650400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr9:116646800-116650600	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr9:116646800-116650800	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr9:116647000-116648400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr9:116647000-116649000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr9:116647000-116650200	Enhancers	HUVEC	blood vessel
24	chr9:116647000-116650600	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr9:116647000-116650800	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr9:116647000-116651800	Enhancers	Fetal Muscle Leg	muscle
27	chr9:116647200-116648400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr9:116647200-116648800	Enhancers	H1 Cell Line	embryonic stem cell
29	chr9:116647200-116648800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr9:116647200-116649800	Enhancers	Stomach Mucosa	stomach
31	chr9:116647400-116648400	Enhancers	Liver	Liver
32	chr9:116647400-116648400	Enhancers	Ovary	ovary
33	chr9:116647400-116648600	Enhancers	Fetal Muscle Trunk	muscle
34	chr9:116647400-116649600	Enhancers	NH-A	brain
35	chr9:116647400-116651200	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr9:116647600-116648400	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr9:116647600-116648800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr9:116647600-116649400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr9:116647600-116649800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr9:116647600-116649800	Weak transcription	Esophagus	oesophagus
41	chr9:116647600-116650000	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr9:116647800-116648400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr9:116647800-116648400	Enhancers	Primary T helper cells fromperipheralblood	blood
44	chr9:116647800-116648400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
45	chr9:116647800-116648400	Enhancers	Rectal Mucosa Donor 29	rectum
46	chr9:116647800-116648400	Enhancers	Rectal Smooth Muscle	rectum
47	chr9:116647800-116648400	Enhancers	Right Ventricle	heart
48	chr9:116647800-116648600	Enhancers	Primary T cells fromperipheralblood	blood
49	chr9:116647800-116648800	Enhancers	Left Ventricle	heart
50	chr9:116647800-116648800	Enhancers	Spleen	Spleen

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