Variant report

Variant	rs10982490
Chromosome Location	chr9:117768771-117768772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10982495	0.86[AMR][1000 genomes]
rs10982498	0.94[LWK][hapmap]
rs10982499	0.83[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831696	chr9:117701582-117874150	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv615250	chr9:117768021-118012841	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117765200-117770800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr9:117765400-117771800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr9:117767800-117773000	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr9:117768000-117771400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr9:117768200-117769800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr9:117768200-117769800	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr9:117768400-117769800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:117768400-117776000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr9:117768600-117768800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
10	chr9:117768600-117769400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:117768600-117769400	Enhancers	Esophagus	oesophagus
12	chr9:117768600-117769600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:117768600-117769600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr9:117768600-117770000	Enhancers	Osteobl	bone
15	chr9:117768600-117771000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:117768600-117771600	Enhancers	NHDF-Ad	bronchial
17	chr9:117768600-117774400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links