Variant report

Variant	rs10982496
Chromosome Location	chr9:117782482-117782483
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1888221	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831696	chr9:117701582-117874150	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv615250	chr9:117768021-118012841	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv916912	chr9:117770039-118014140	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117771200-117783000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr9:117771400-117784600	Weak transcription	HMEC	breast
3	chr9:117773400-117803200	Weak transcription	Esophagus	oesophagus
4	chr9:117773600-117787200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr9:117774800-117783200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr9:117776400-117784400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr9:117776400-117786000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:117776800-117791600	Weak transcription	Fetal Lung	lung
9	chr9:117777000-117783200	Weak transcription	Fetal Muscle Leg	muscle
10	chr9:117778000-117783200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr9:117778800-117783200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr9:117779000-117783400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr9:117779200-117782600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr9:117779800-117783200	Weak transcription	NHEK	skin
15	chr9:117779800-117787600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:117781000-117782600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr9:117781000-117788800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr9:117781600-117784600	Weak transcription	HSMM	muscle
19	chr9:117781600-117784800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr9:117781800-117782600	Weak transcription	NH-A	brain
21	chr9:117781800-117783000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr9:117781800-117783200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr9:117781800-117783200	Weak transcription	Fetal Stomach	stomach
24	chr9:117781800-117783400	Genic enhancers	Osteobl	bone
25	chr9:117781800-117784400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr9:117781800-117791600	Weak transcription	Aorta	Aorta
27	chr9:117781800-117797400	Strong transcription	Cortex derived primary cultured neurospheres	brain
28	chr9:117781800-117798200	Weak transcription	Fetal Intestine Large	intestine
29	chr9:117781800-117798400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr9:117781800-117808600	Weak transcription	Fetal Intestine Small	intestine
31	chr9:117782000-117785000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr9:117782000-117785000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr9:117782000-117785400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr9:117782000-117788200	Weak transcription	Spleen	Spleen
35	chr9:117782000-117789600	Weak transcription	Gastric	stomach
36	chr9:117782200-117782600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr9:117782200-117782600	Weak transcription	NHDF-Ad	bronchial
38	chr9:117782200-117783000	Weak transcription	Colon Smooth Muscle	Colon
39	chr9:117782200-117783000	Weak transcription	Stomach Smooth Muscle	stomach
40	chr9:117782200-117783000	Weak transcription	NHLF	lung
41	chr9:117782200-117784200	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr9:117782200-117784800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr9:117782200-117785400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr9:117782200-117786000	Weak transcription	Rectal Smooth Muscle	rectum
45	chr9:117782200-117786600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr9:117782400-117848200	Weak transcription	Brain Substantia Nigra	brain

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