Variant report

Variant	rs10982730
Chromosome Location	chr9:100321878-100321879
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10817760	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10817771	0.85[ASN][1000 genomes]
rs10982736	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10982748	0.88[ASN][1000 genomes]
rs1475545	0.82[ASN][1000 genomes]
rs7865885	0.84[ASN][1000 genomes]
rs7875496	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039240	chr9:100292680-100415269	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv540179	chr9:100292680-100415269	Genic enhancers Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100311800-100325200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr9:100315600-100326200	Weak transcription	Esophagus	oesophagus
3	chr9:100316000-100322400	Enhancers	Right Atrium	heart
4	chr9:100316400-100322400	Enhancers	Left Ventricle	heart
5	chr9:100316600-100322400	Enhancers	Ovary	ovary
6	chr9:100317200-100322000	Enhancers	Fetal Brain Male	brain
7	chr9:100318200-100322400	Enhancers	Right Ventricle	heart
8	chr9:100318800-100323200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:100319200-100327400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr9:100320000-100322800	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr9:100320000-100323200	Weak transcription	Brain Substantia Nigra	brain
12	chr9:100320000-100323800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr9:100320000-100326200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:100320000-100326200	Weak transcription	Pancreas	Pancrea
15	chr9:100320000-100326200	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr9:100320000-100326600	Weak transcription	Gastric	stomach
17	chr9:100320400-100322400	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr9:100320400-100324600	Weak transcription	Fetal Muscle Leg	muscle
19	chr9:100320400-100326400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr9:100320600-100326000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr9:100320800-100325600	Weak transcription	Aorta	Aorta
22	chr9:100321200-100325000	Strong transcription	K562	blood
23	chr9:100321400-100323200	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr9:100321400-100323200	Weak transcription	Lung	lung
25	chr9:100321400-100323200	Weak transcription	Psoas Muscle	Psoas
26	chr9:100321400-100325400	Weak transcription	Adipose Nuclei	Adipose
27	chr9:100321600-100322600	Strong transcription	Stomach Smooth Muscle	stomach
28	chr9:100321600-100323200	Weak transcription	Brain Angular Gyrus	brain
29	chr9:100321600-100323200	Weak transcription	Brain Cingulate Gyrus	brain
30	chr9:100321600-100323200	Weak transcription	Brain Hippocampus Middle	brain
31	chr9:100321600-100323400	Weak transcription	Spleen	Spleen
32	chr9:100321600-100324800	Weak transcription	Fetal Muscle Trunk	muscle
33	chr9:100321600-100325400	Weak transcription	Fetal Brain Female	brain
34	chr9:100321600-100326000	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr9:100321600-100326400	Weak transcription	Rectal Smooth Muscle	rectum
36	chr9:100321600-100331400	Weak transcription	Liver	Liver
37	chr9:100321800-100322000	Flanking Active TSS	GM12878-XiMat	blood
38	chr9:100321800-100322200	Weak transcription	Brain Anterior Caudate	brain
39	chr9:100321800-100322200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr9:100321800-100322600	Weak transcription	Fetal Heart	heart
41	chr9:100321800-100323200	Weak transcription	HSMMtube	muscle
42	chr9:100321800-100323800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr9:100321800-100324000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr9:100321800-100326200	Weak transcription	Colon Smooth Muscle	Colon

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