Variant report

Variant	rs10982953
Chromosome Location	chr9:118613828-118613829
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10448252	1.00[EUR][1000 genomes]
rs10759826	0.85[EUR][1000 genomes]
rs10817838	0.98[EUR][1000 genomes]
rs10982940	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10982941	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10982942	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10982943	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10982952	1.00[EUR][1000 genomes]
rs10982957	0.98[EUR][1000 genomes]
rs10982967	0.83[EUR][1000 genomes]
rs10982968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10982970	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10982976	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10982978	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10982979	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10982981	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10982982	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10982983	1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10982984	1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10982985	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10982988	1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10982991	0.82[CHB][hapmap];0.83[EUR][1000 genomes]
rs10982996	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10982997	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs10982998	0.85[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs10983000	0.85[CHB][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10983003	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10983004	0.85[CHB][hapmap];1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10983005	0.85[CHB][hapmap];1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10983007	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12156496	0.83[EUR][1000 genomes]
rs12378638	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12378736	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12380105	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12380729	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1243	1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2040485	0.85[CHB][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2418420	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2418424	0.86[ASN][1000 genomes]
rs3761841	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3789264	0.85[CHB][hapmap];1.00[AFR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4145478	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62575660	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62575661	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62575662	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62575663	0.86[ASN][1000 genomes]
rs62575664	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62575665	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62577088	0.82[ASN][1000 genomes]
rs62577089	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs62577094	0.83[EUR][1000 genomes]
rs62577095	1.00[EUR][1000 genomes]
rs62577110	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62577130	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62577137	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62577138	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62577139	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62577140	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62577141	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62577142	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62577143	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62577146	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62577147	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62577148	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62577150	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62577151	0.83[EUR][1000 genomes]
rs62577152	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs68019277	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7024074	1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7029447	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7046862	1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7047141	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72615099	0.80[ASN][1000 genomes]
rs72616610	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72616612	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72616613	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72616614	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72616615	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7861033	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948346	chr9:118107565-118718197	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1046948	chr9:118185587-118926891	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv916622	chr9:118206309-118952390	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv540207	chr9:118206311-118920304	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv491661	chr9:118206312-118802177	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv831699	chr9:118457011-118641819	Enhancers Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118608400-118617600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr9:118610200-118617600	Weak transcription	A549	lung
3	chr9:118611400-118617600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr9:118612000-118614000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:118612200-118614200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:118613400-118617400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr9:118613400-118617600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:118613600-118617600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr9:118613600-118617800	Weak transcription	HSMM	muscle
10	chr9:118613800-118616200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr9:118613800-118617600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr9:118613800-118618000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr9:118613800-118618000	Weak transcription	NHDF-Ad	bronchial
14	chr9:118613800-118618000	Weak transcription	NHLF	lung
15	chr9:118613800-118618200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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