Variant report

Variant	rs10985426
Chromosome Location	chr9:100967797-100967798
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:100966722..100970039-chr9:100971164..100974446,3	MCF-7	breast:
2	chr9:100967570..100970499-chr9:100974928..100976883,2	MCF-7	breast:
3	chr9:100954049..100956818-chr9:100965810..100968665,2	MCF-7	breast:
4	chr9:100967704..100968857-chr9:101025808..101026669,3	MCF-7	breast:
5	chr9:100967758..100968676-chr9:100977811..100978768,2	MCF-7	breast:
6	chr9:100967687..100968926-chr9:101025676..101026669,6	K562	blood:
7	chr9:100954079..100956725-chr9:100967141..100968739,2	MCF-7	breast:
8	chr9:100881360..100882066-chr9:100967705..100968216,2	MCF-7	breast:
9	chr9:100967682..100968648-chr9:100977741..100978390,3	MCF-7	breast:
10	chr9:100967414..100970312-chr9:100980747..100984136,3	K562	blood:
11	chr9:100836803..100837308-chr9:100967742..100968572,2	K562	blood:
12	chr9:100967716..100968659-chr9:101469208..101469729,2	K562	blood:
13	chr9:100967700..100968256-chr9:101025763..101027217,6	MCF-7	breast:
14	chr9:100966646..100969743-chr9:101023259..101026194,3	K562	blood:
15	chr9:100967742..100968255-chr9:100996195..100996846,2	MCF-7	breast:
16	chr9:100836445..100837275-chr9:100967671..100968214,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000095383	Chromatin interaction
ENSG00000095380	Chromatin interaction
ENSG00000106789	Chromatin interaction
ENSG00000106785	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10217245	0.82[EUR][1000 genomes]
rs10217458	0.82[EUR][1000 genomes]
rs10818608	0.83[EUR][1000 genomes]
rs10985425	0.83[EUR][1000 genomes]
rs12339078	0.83[EUR][1000 genomes]
rs12342843	0.83[EUR][1000 genomes]
rs12342968	0.83[EUR][1000 genomes]
rs12347046	0.82[EUR][1000 genomes]
rs41283618	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053729	chr9:100909554-100997718	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv520067	chr9:100927161-100978542	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv831663	chr9:100941048-101109492	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv1045780	chr9:100943318-101080389	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv540180	chr9:100943318-101080389	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100955800-100970400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr9:100955800-100970400	Weak transcription	Left Ventricle	heart
3	chr9:100955800-100970400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr9:100955800-100970600	Weak transcription	Ovary	ovary
5	chr9:100955800-100970600	Weak transcription	Right Ventricle	heart
6	chr9:100955800-100975000	Weak transcription	Primary B cells from cord blood	blood
7	chr9:100955800-100975000	Weak transcription	NHDF-Ad	bronchial
8	chr9:100955800-100975200	Weak transcription	NH-A	brain
9	chr9:100955800-100975600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr9:100955800-101003200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr9:100956000-100969800	Weak transcription	Primary T cells from cord blood	blood
12	chr9:100956000-100970000	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr9:100956000-100970600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr9:100956000-100971000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr9:100956000-100981000	Weak transcription	A549	lung
16	chr9:100956200-100967800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr9:100956200-100967800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr9:100956200-100967800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr9:100956200-100968000	Weak transcription	Stomach Mucosa	stomach
20	chr9:100956200-100970000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr9:100956200-100973000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr9:100957000-100967800	Strong transcription	Fetal Intestine Small	intestine
23	chr9:100957800-100968400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr9:100958200-100967800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr9:100958200-100968400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr9:100958600-100968200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr9:100958600-100985400	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr9:100959200-100967800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr9:100959200-100977000	Strong transcription	HMEC	breast
30	chr9:100959600-100984400	Strong transcription	Osteobl	bone
31	chr9:100959800-100985200	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr9:100960000-100967800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr9:100960000-100968200	Strong transcription	NHEK	skin
34	chr9:100960400-100967800	Strong transcription	Muscle Satellite Cultured Cells	--
35	chr9:100961200-100967800	Strong transcription	Fetal Intestine Large	intestine
36	chr9:100961400-101001400	Weak transcription	Right Atrium	heart
37	chr9:100962000-100969800	Weak transcription	Fetal Lung	lung
38	chr9:100962000-100970800	Strong transcription	HSMM	muscle
39	chr9:100962000-100972600	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr9:100962200-100967800	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr9:100962400-100968200	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr9:100962400-100970200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr9:100962400-100970400	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr9:100962400-100970400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr9:100962400-100970800	Weak transcription	Thymus	Thymus
46	chr9:100962600-100969800	Weak transcription	Brain Cingulate Gyrus	brain
47	chr9:100962600-100970000	Weak transcription	Brain Substantia Nigra	brain
48	chr9:100962600-100975200	Weak transcription	Brain Anterior Caudate	brain
49	chr9:100962800-100968600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr9:100962800-100970400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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