Variant report

Variant	rs10985508
Chromosome Location	chr9:100985586-100985587
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:100985570..100988965-chr9:100991767..100994360,5	MCF-7	breast:
2	chr9:100983664..100985681-chr9:101009334..101011944,2	MCF-7	breast:
3	chr9:100974489..100979508-chr9:100984246..100988193,5	MCF-7	breast:
4	chr9:100984465..100987162-chr9:100987810..100989533,3	K562	blood:
5	chr9:100978764..100982569-chr9:100985493..100988173,3	K562	blood:
6	chr9:100940296..100942247-chr9:100983555..100986417,2	MCF-7	breast:
7	chr9:100984988..100987219-chr9:101017496..101019416,2	MCF-7	breast:
8	chr9:100978143..100990074-chr9:101014745..101021064,26	MCF-7	breast:
9	chr9:100983381..100985865-chr9:101008281..101010298,2	K562	blood:
10	chr9:100981625..100983478-chr9:100983956..100985664,2	MCF-7	breast:
11	chr9:100984926..100990430-chr9:100990519..100995039,6	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NANS-2	chr9:100985476-100985616	NONHSAT133602

No data

Variant related genes	Relation type
ENSG00000095383	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10818575	0.82[CHD][hapmap]
rs10818607	0.81[ASN][1000 genomes]
rs10818621	0.91[ASN][1000 genomes]
rs16913615	0.86[CHD][hapmap]
rs16913616	0.91[CHD][hapmap]
rs16913644	1.00[CEU][hapmap];0.91[CHD][hapmap]
rs16914086	0.83[CEU][hapmap];0.90[CHB][hapmap];0.93[TSI][hapmap];0.87[EUR][1000 genomes]
rs16914196	0.83[CEU][hapmap];0.90[CHB][hapmap];0.85[EUR][1000 genomes]
rs3758258	0.90[CHD][hapmap];0.80[ASN][1000 genomes]
rs3780454	0.90[CHB][hapmap];0.95[CHD][hapmap];0.88[ASN][1000 genomes]
rs3824452	0.83[CEU][hapmap];0.91[CHD][hapmap];0.85[ASN][1000 genomes]
rs4743183	0.90[CHD][hapmap]
rs4743184	0.91[CHD][hapmap]
rs55754658	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053729	chr9:100909554-100997718	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv831663	chr9:100941048-101109492	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv1045780	chr9:100943318-101080389	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv540180	chr9:100943318-101080389	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100955800-101003200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:100961400-101001400	Weak transcription	Right Atrium	heart
3	chr9:100968000-100987000	Weak transcription	Small Intestine	intestine
4	chr9:100968400-100995600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr9:100968400-100997600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr9:100968600-101010400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr9:100968800-100998000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr9:100968800-101011000	Weak transcription	Primary B cells from peripheral blood	blood
9	chr9:100969200-100985600	Strong transcription	Fetal Intestine Small	intestine
10	chr9:100969400-101004800	Weak transcription	Brain Germinal Matrix	brain
11	chr9:100969600-100997200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr9:100969800-100991800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr9:100970200-101001600	Weak transcription	Fetal Muscle Trunk	muscle
14	chr9:100973000-100985800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr9:100974800-101010600	Weak transcription	Colon Smooth Muscle	Colon
16	chr9:100976400-100998800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:100978800-100986200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr9:100980200-101010200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr9:100980800-100986000	Strong transcription	Rectal Mucosa Donor 31	rectum
20	chr9:100981600-100985600	Strong transcription	Primary T cells from cord blood	blood
21	chr9:100981600-100987600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr9:100981800-101010400	Weak transcription	Fetal Thymus	thymus
23	chr9:100982000-100985600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr9:100982200-100990800	Weak transcription	Primary B cells from cord blood	blood
25	chr9:100982200-100991200	Weak transcription	Fetal Lung	lung
26	chr9:100982400-100987000	Weak transcription	Liver	Liver
27	chr9:100982600-100987600	Weak transcription	Rectal Smooth Muscle	rectum
28	chr9:100982800-101004600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr9:100983000-100990400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr9:100983000-101007200	Weak transcription	Fetal Brain Male	brain
31	chr9:100983200-100989400	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr9:100983200-100990800	Weak transcription	Brain Anterior Caudate	brain
33	chr9:100983200-100992600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr9:100983200-100996600	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr9:100983200-100997600	Weak transcription	Fetal Brain Female	brain
36	chr9:100983400-100985600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr9:100983400-100987600	Weak transcription	Colonic Mucosa	Colon
38	chr9:100983400-100987800	Weak transcription	Thymus	Thymus
39	chr9:100983400-100988200	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr9:100983400-100990600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr9:100983400-101006200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr9:100983600-100987200	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr9:100983600-100987600	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr9:100983600-100988000	Weak transcription	Brain Hippocampus Middle	brain
45	chr9:100983600-100988800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr9:100983600-100990800	Weak transcription	Right Ventricle	heart
47	chr9:100983600-100994000	Weak transcription	Brain Angular Gyrus	brain
48	chr9:100983800-100985800	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr9:100983800-100987000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr9:100983800-100987200	Weak transcription	Duodenum Mucosa	Duodenum

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