Variant report

Variant	rs10985839
Chromosome Location	chr9:101075752-101075753
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101074851..101076971-chr9:101866162..101868998,2	MCF-7	breast:
2	chr9:101053633..101055705-chr9:101074383..101076879,2	K562	blood:
3	chr9:101074908..101076596-chr9:101160590..101163322,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106799	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10760218	0.84[CHB][hapmap]
rs10985808	0.93[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10985811	0.84[CEU][hapmap];0.90[EUR][1000 genomes]
rs10985817	0.93[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10985819	0.93[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10985825	0.84[CEU][hapmap];0.92[CHB][hapmap];0.87[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10985826	0.86[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16914811	0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2304389	0.84[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2304390	0.84[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35126377	0.97[ASN][1000 genomes]
rs3780444	0.92[CHB][hapmap];0.94[JPT][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3780445	0.86[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3824451	0.84[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4743197	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4743198	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4743199	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7022133	0.97[ASN][1000 genomes]
rs7856392	0.93[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.91[EUR][1000 genomes]
rs7867465	0.85[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7867834	0.84[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7869257	0.85[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7869364	0.84[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831663	chr9:100941048-101109492	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1045780	chr9:100943318-101080389	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv540180	chr9:100943318-101080389	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv519818	chr9:101024887-101092316	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101061600-101083400	Weak transcription	Brain Angular Gyrus	brain
2	chr9:101062000-101078000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr9:101066600-101076800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:101069000-101085800	Weak transcription	Right Atrium	heart
5	chr9:101069400-101076800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr9:101070800-101078000	Weak transcription	Fetal Brain Male	brain
7	chr9:101072000-101078000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr9:101072600-101076400	Weak transcription	Placenta	Placenta
9	chr9:101073400-101076400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:101073600-101076600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr9:101073600-101076800	Weak transcription	NHDF-Ad	bronchial
12	chr9:101073800-101076400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr9:101074200-101076400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:101075400-101082200	Enhancers	K562	blood

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