Variant report

Variant	rs1098877
Chromosome Location	chr12:44423109-44423110
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10785493	1.00[EUR][1000 genomes]
rs1701087	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832390	chr12:44318071-44512114	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1041188	chr12:44331098-44528712	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832391	chr12:44394137-44552555	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44390800-44439200	Weak transcription	Esophagus	oesophagus
2	chr12:44402000-44432200	Weak transcription	Aorta	Aorta
3	chr12:44422200-44437800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr12:44422600-44423400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr12:44422600-44423400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr12:44422600-44423400	Enhancers	NHEK	skin
7	chr12:44422800-44423200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr12:44422800-44423400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr12:44422800-44423400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr12:44422800-44423800	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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