Variant report

Variant	rs10988942
Chromosome Location	chr9:102770914-102770915
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:102769641..102771864-chr9:102771947..102774491,3	MCF-7	breast:
2	chr9:102767086..102769713-chr9:102770531..102773622,3	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10988946	1.00[AMR][1000 genomes]
rs10988959	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12337786	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1048674	chr9:102752236-103038259	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1052007	chr9:102766948-103033937	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102718000-102777600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr9:102729600-102826800	Weak transcription	HMEC	breast
3	chr9:102731000-102778200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr9:102752200-102771600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr9:102757400-102790600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr9:102759600-102777000	Weak transcription	HUVEC	blood vessel
7	chr9:102760800-102783400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr9:102761000-102778200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr9:102762000-102790000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr9:102763400-102783400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr9:102763800-102773000	Strong transcription	Primary B cells from peripheral blood	blood
12	chr9:102764200-102773400	Weak transcription	Fetal Heart	heart
13	chr9:102764200-102783200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr9:102765200-102777000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr9:102766000-102773400	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr9:102766200-102778200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr9:102766400-102783400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:102766400-102784600	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr9:102766400-102785400	Weak transcription	Fetal Brain Male	brain
20	chr9:102766400-102787000	Weak transcription	Colon Smooth Muscle	Colon
21	chr9:102766400-102794800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr9:102766600-102787200	Weak transcription	Psoas Muscle	Psoas
23	chr9:102766800-102773800	Weak transcription	Fetal Kidney	kidney
24	chr9:102766800-102783400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr9:102766800-102784600	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr9:102766800-102793000	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr9:102767000-102773800	Weak transcription	NHLF	lung
28	chr9:102767000-102778000	Weak transcription	Fetal Stomach	stomach
29	chr9:102767000-102778200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr9:102767000-102781400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr9:102767000-102783400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr9:102767000-102783400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr9:102767000-102783400	Weak transcription	NHEK	skin
34	chr9:102767000-102785200	Weak transcription	Brain Substantia Nigra	brain
35	chr9:102767000-102785400	Weak transcription	Brain Germinal Matrix	brain
36	chr9:102767000-102787800	Weak transcription	Right Ventricle	heart
37	chr9:102767000-102799400	Weak transcription	Spleen	Spleen
38	chr9:102767000-102820400	Weak transcription	Colonic Mucosa	Colon
39	chr9:102767200-102775200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr9:102767200-102776800	Weak transcription	Stomach Smooth Muscle	stomach
41	chr9:102767200-102777000	Weak transcription	Brain Cingulate Gyrus	brain
42	chr9:102767200-102784800	Weak transcription	A549	lung
43	chr9:102767200-102789800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr9:102767200-102821800	Weak transcription	Rectal Smooth Muscle	rectum
45	chr9:102767600-102771800	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr9:102767600-102773400	Weak transcription	Fetal Brain Female	brain
47	chr9:102767600-102776400	Weak transcription	Thymus	Thymus
48	chr9:102767600-102776600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr9:102767600-102776600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr9:102767600-102776800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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