Variant report

Variant	rs10989104
Chromosome Location	chr9:103238569-103238570
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:103236639..103238716-chr9:103241240..103244059,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1000477	0.89[ASN][1000 genomes]
rs10989121	0.89[ASN][1000 genomes]
rs10989152	0.81[ASN][1000 genomes]
rs10989153	0.81[ASN][1000 genomes]
rs10989154	0.81[ASN][1000 genomes]
rs10989156	0.81[ASN][1000 genomes]
rs12235981	0.81[ASN][1000 genomes]
rs12236970	0.81[ASN][1000 genomes]
rs1931140	0.81[ASN][1000 genomes]
rs2069236	0.88[ASN][1000 genomes]
rs55827987	0.81[ASN][1000 genomes]
rs56163523	0.81[ASN][1000 genomes]
rs59823190	0.81[ASN][1000 genomes]
rs7021028	0.81[ASN][1000 genomes]
rs7028822	0.89[ASN][1000 genomes]
rs72735148	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv825012	chr9:103152205-103256281	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv614955	chr9:103181596-103261227	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103236600-103241800	Weak transcription	Psoas Muscle	Psoas
2	chr9:103236800-103239000	Weak transcription	Right Atrium	heart
3	chr9:103237000-103251600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:103237200-103238600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr9:103237200-103238600	Enhancers	HepG2	liver
6	chr9:103237200-103241800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:103237400-103238600	Enhancers	Brain Substantia Nigra	brain
8	chr9:103237400-103239200	Weak transcription	NHDF-Ad	bronchial
9	chr9:103237600-103238600	Enhancers	Fetal Brain Male	brain
10	chr9:103237600-103240400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:103237800-103238600	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr9:103238000-103240400	Weak transcription	Brain Angular Gyrus	brain
13	chr9:103238000-103240400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr9:103238000-103248600	Weak transcription	Brain Hippocampus Middle	brain
15	chr9:103238200-103238600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:103238200-103238600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr9:103238200-103240400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr9:103238200-103242200	Weak transcription	Brain Germinal Matrix	brain
19	chr9:103238200-103249000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr9:103238200-103251600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr9:103238200-103252000	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr9:103238200-103264200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr9:103238200-103274600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr9:103238400-103238600	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr9:103238400-103238600	Active TSS	iPS-20b Cell Line	embryonic stem cell
26	chr9:103238400-103239800	Weak transcription	Fetal Brain Female	brain
27	chr9:103238400-103240200	Weak transcription	Brain Anterior Caudate	brain
28	chr9:103238400-103240400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr9:103238400-103241800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr9:103238400-103243200	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr9:103238400-103251400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr9:103238400-103251400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr9:103238400-103251800	Weak transcription	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links