Variant report

Variant	rs10989391
Chromosome Location	chr9:103848764-103848765
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10156478	1.00[MKK][hapmap]
rs10989358	1.00[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428542	chr9:103709079-103878127	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv831669	chr9:103709125-103878122	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103836200-103849800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr9:103845400-103850200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:103845600-103849800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr9:103845800-103849600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr9:103846400-103849600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr9:103846400-103849800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr9:103846600-103849600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr9:103846800-103849600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr9:103846800-103849800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr9:103847800-103851000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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