Variant report

Variant	rs10989556
Chromosome Location	chr9:104346592-104346593
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10115763	0.87[JPT][hapmap]
rs10122869	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10989553	0.87[JPT][hapmap]
rs12686021	0.95[ASN][1000 genomes]
rs1323433	0.88[JPT][hapmap]
rs16920473	0.80[JPT][hapmap]
rs28736702	0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3739723	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs3739724	0.89[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs3824473	0.93[JPT][hapmap]
rs6479055	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7023041	0.96[ASN][1000 genomes]
rs7030238	0.87[JPT][hapmap]
rs7034754	0.80[JPT][hapmap]
rs7858998	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv949579	chr9:104229820-104512923	Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1052492	chr9:104263419-104387782	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv831672	chr9:104300755-104480849	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104325200-104350000	Weak transcription	HSMMtube	muscle
2	chr9:104327400-104348400	Weak transcription	Aorta	Aorta
3	chr9:104344000-104347000	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr9:104344200-104346800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr9:104344400-104346800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr9:104344400-104346800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr9:104344800-104347800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr9:104345400-104352000	Weak transcription	A549	lung
9	chr9:104345600-104346600	Enhancers	H1 Cell Line	embryonic stem cell
10	chr9:104346000-104349600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:104346400-104346600	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr9:104346400-104348800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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