Variant report

Variant	rs10989902
Chromosome Location	chr9:104986079-104986080
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10820094	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10820095	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10820096	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10820097	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10820098	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10820100	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10989903	0.98[ASN][1000 genomes]
rs1475795	0.80[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs6479093	0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9644962	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9644963	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048227	chr9:104546761-105162810	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv893635	chr9:104789573-104990394	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv831674	chr9:104827719-105011190	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1052675	chr9:104868071-105042725	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv466447	chr9:104874984-104994909	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv615017	chr9:104874984-104994909	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv893642	chr9:104904454-105158032	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv893644	chr9:104926878-104990394	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv615021	chr9:104938113-104991804	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv615022	chr9:104940829-104990394	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv1038241	chr9:104943675-105046156	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104985600-104986200	Active TSS	H1 Cell Line	embryonic stem cell
2	chr9:104985600-104986200	Active TSS	H9 Cell Line	embryonic stem cell
3	chr9:104985600-104986200	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr9:104985600-104986200	Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr9:104985600-104986200	Active TSS	iPS-18 Cell Line	embryonic stem cell
6	chr9:104985600-104986200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:104985600-104986200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:104985600-104986400	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr9:104985600-104986400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:104985600-104986600	Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr9:104985600-104986600	Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr9:104985800-104986200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr9:104985800-104986200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:104985800-104986200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr9:104985800-104986400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr9:104985800-104986400	Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr9:104985800-104986400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr9:104985800-104986400	Active TSS	Liver	Liver
19	chr9:104985800-104986400	Active TSS	Rectal Mucosa Donor 29	rectum
20	chr9:104985800-104986400	Active TSS	Rectal Mucosa Donor 31	rectum
21	chr9:104985800-104986600	Active TSS	ES-WA7 Cell Line	embryonic stem cell

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