Variant report

Variant	rs10990467
Chromosome Location	chr9:105801806-105801807
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10739864	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10760940	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10760941	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10820352	0.90[ASN][1000 genomes]
rs10820353	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10820355	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10820356	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10820357	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10820358	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10820359	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10820360	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10990468	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1341209	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1341210	0.89[ASN][1000 genomes]
rs1341211	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1578451	0.82[ASN][1000 genomes]
rs1578452	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1578453	0.99[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1856915	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1856916	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4373580	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4406462	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4743614	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743615	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479153	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7038696	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7038800	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893656	chr9:105625399-105853222	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv1051059	chr9:105643281-105863176	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv1047506	chr9:105643281-105866457	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv917223	chr9:105658139-105868400	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1053184	chr9:105658175-105860580	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv540186	chr9:105658175-105860580	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	esv2762824	chr9:105662920-105866457	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
8	nsv893657	chr9:105704669-105837587	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv1036220	chr9:105707435-105810142	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
10	nsv466455	chr9:105707984-105999196	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
11	nsv516844	chr9:105718090-105999196	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
12	nsv1046469	chr9:105725107-105981616	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
13	nsv540187	chr9:105725107-105981616	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
14	nsv615037	chr9:105756213-105884764	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
15	nsv615038	chr9:105758477-105815315	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
16	nsv893658	chr9:105758477-105825222	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
17	nsv1039024	chr9:105763003-105813170	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
18	nsv1039589	chr9:105763418-105822396	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
19	nsv1053646	chr9:105770158-105822396	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:105800400-105802400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr9:105800600-105802600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr9:105800600-105803400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr9:105801400-105802400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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