Variant report

Variant	rs10991568
Chromosome Location	chr9:107934801-107934802
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10991567	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10991569	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1979017	0.91[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1979018	0.91[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1979020	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2077651	0.90[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs6479297	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs6479298	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7029699	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7848029	0.94[EUR][1000 genomes]
rs7848503	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7858496	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7866352	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7872781	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046935	chr9:107414720-108028061	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv893684	chr9:107893629-108001107	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv831678	chr9:107923522-108112813	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:107931800-107936200	Weak transcription	Fetal Stomach	stomach
2	chr9:107933000-107936600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:107933200-107937000	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr9:107933400-107935600	Weak transcription	Fetal Lung	lung
5	chr9:107934000-107935000	Enhancers	Fetal Muscle Leg	muscle
6	chr9:107934000-107935600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:107934000-107936800	Enhancers	H9 Cell Line	embryonic stem cell
8	chr9:107934000-107937000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr9:107934200-107935000	Enhancers	Fetal Muscle Trunk	muscle
10	chr9:107934200-107936800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr9:107934200-107937000	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr9:107934400-107935400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr9:107934400-107935400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr9:107934400-107935400	Weak transcription	Left Ventricle	heart
15	chr9:107934400-107935600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr9:107934600-107935600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr9:107934800-107935200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr9:107934800-107935200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr9:107934800-107935200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr9:107934800-107935800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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