Variant report

Variant	rs10991706
Chromosome Location	chr9:93705632-93705633
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10119923	1.00[AMR][1000 genomes]
rs1675306	0.92[AFR][1000 genomes]
rs2774255	0.98[AFR][1000 genomes]
rs28450562	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28532821	1.00[AMR][1000 genomes]
rs28534655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7027754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7872290	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv893568	chr9:93539879-93774385	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93703800-93706000	Enhancers	Dnd41	blood
2	chr9:93704000-93706800	Enhancers	HMEC	breast
3	chr9:93704200-93705800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr9:93704200-93706000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:93704200-93706000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr9:93704200-93706200	Enhancers	NHEK	skin
7	chr9:93704400-93705800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr9:93704600-93705800	Enhancers	Esophagus	oesophagus
9	chr9:93704600-93705800	Enhancers	GM12878-XiMat	blood
10	chr9:93704800-93705800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr9:93704800-93705800	Enhancers	HSMM	muscle
12	chr9:93704800-93706000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr9:93705200-93706000	Enhancers	NH-A	brain
14	chr9:93705400-93705800	Enhancers	Muscle Satellite Cultured Cells	--
15	chr9:93705600-93705800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:93705600-93706000	Enhancers	Stomach Mucosa	stomach
17	chr9:93705600-93706200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links