Variant report

No.	Distal block	Cell Line	Cell type
1	chr9:93676920..93679148-chr9:93718490..93720720,2	MCF-7	breast:
2	chr9:93716740..93718959-chr9:94188230..94189732,2	MCF-7	breast:
3	chr9:93713067..93715397-chr9:93717849..93720847,2	K562	blood:

Variant related genes	Relation type
ENSG00000233081	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10820818	0.81[ASN][1000 genomes]
rs10991701	0.81[ASN][1000 genomes]
rs10991702	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs10991707	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs10991708	0.81[ASN][1000 genomes]
rs10991710	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10991711	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10991712	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10991715	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10991717	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991732	0.82[EUR][1000 genomes]
rs10991733	1.00[AFR][1000 genomes]
rs12156456	0.91[AMR][1000 genomes]
rs12156458	0.84[AMR][1000 genomes]
rs1475553	0.81[ASN][1000 genomes]
rs1475554	0.81[ASN][1000 genomes]
rs4146455	0.87[AMR][1000 genomes]
rs749101	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs749102	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs749103	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046989	chr9:93353987-93800416	Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv893568	chr9:93539879-93774385	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93713400-93720400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:93717800-93721000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:93718000-93719200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:93718000-93719200	Enhancers	Placenta Amnion	Placenta Amnion
5	chr9:93718000-93720800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:93718200-93718800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:93718200-93719200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:93718200-93719200	Enhancers	Placenta	Placenta
9	chr9:93718200-93719600	Enhancers	NHDF-Ad	bronchial
10	chr9:93718400-93718800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr9:93718400-93718800	Enhancers	NHEK	skin
12	chr9:93718400-93719000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr9:93718400-93719200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr9:93718400-93719200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:93718400-93719200	Enhancers	HSMMtube	muscle
16	chr9:93718400-93719400	Enhancers	Osteobl	bone
17	chr9:93718400-93723000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:93718600-93719200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr9:93718600-93723200	Weak transcription	HMEC	breast
20	chr9:93718600-93723600	Weak transcription	Aorta	Aorta

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